PRGDB00160224 (Egrandis_v1_0.025806m)

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Egrandis_v1_0.025806m
Gene Type Putative_R-Genes,_predicted_from_Pythozome
GenBank
Gene Class T
Domain Type TIR, LRR
Gene Species Areca catechu

Comment?

Disease resistance protein (TIR-NBS class) (best arabidopsis hit)

DNA Sequence

ATGTGGGGCGTCTTCCTCGACCTCTTTTACTGCCTTTGTAGGCTATGTTCCTCGTCCTCCAATTCTCTTGAGATGGAAAGAAATGAACCCACTCATTTAGAAGATCAGGATTCCGGGGCTTCTTCCTCATGGTCATCTCCACTTGCAGGTGATTATGAAGGTGGAACTAAAAAGATAGAAGGAAATGATTACGAAGTGTTCTTGAGCTTTAGAGGGAAGGATACTCGTAAAGGCTTCACTGATTATCTCTATACCAGTCTTGTTGATGCAAGAGTTCATGTGTTCAGAGACGACAATGAGCTTCGTGTTGGTGAGGAGATTGGACCGGAACTTTTCCATAGTATTACACAATCTAAGATCTCCATCCCGATTATCTCAGAGGACTACGCTTCCAGTAAATGGTGCCTTCACGAGCTGGCTCATATGTTGAAGTGTAAGAGAAATGGAGGGCAAACGGTTTTGCCCATATTTTACAAAGTGGAACCCTCGCAATTGCGAAATCCTAGTGGTAGATTAAGAGATGCTATCAATGCACATAAAAAGAAATTGGGCAAAATTGTTGCAGAGGAATGGGAACAAGTGCTTAAGGAAGTCAGTTGCTTAAAAGGATTGGAATCGGAGAAAGTTGAAAACGGGTACACTGTTCTCCACCAAAACATTGTTAACTTCTTTTAA


Protein sequences

Name Description Sequence
Egrandis_v1_0.025806m Disease resistance protein (TIR-NBS class) (best arabidopsis hit)

MWGVFLDLFYCLCRLCSSSSNSLEMERNEPTHLEDQDSGASSSWSSPLAGDYEGGTKKIEGNDYEVFLSFRGKDTRKGFTDYLYTSLVDARVHVFRDDNELRVGEEIGPELFHSITQSKISIPIISEDYASSKWCLHELAHMLKCKRNGGQTVLPIFYKVEPSQLRNPSGRLRDAINAHKKKLGKIVAEEWEQVLKEVSCLKGLESEKVENGYTVLHQNIVNFF*

Domains

Domain Start-End Description Sequence

Seg: seg
11-29 seg

CLCRLCSSSSNSLEMERNE

Seg: seg
38-46 seg

SGASSSWSS

superfamily: SSF52200
IPR000157
52-204 Toll/Interleukin receptor TIR domain
Toll/interleukin-1 receptor homology (TIR) domain

YEGGTKKIEGNDYEVFLSFRGKDTRKGFTDYLYTSLVDARVHVFRDDNELRVGEEIGPELFHSITQSKISIPIISEDYASSKWCLHELAHMLKCKRNGGQTVLPIFYKVEPSQLRNPSGRLRDAINAHKKKLGKIVAEEWEQVLKEVSCLKGL

Gene3D: G3DSA:3.40.50.10140
62-197 no description

NDYEVFLSFRGKDTRKGFTDYLYTSLVDARVHVFRDDNELRVGEEIGPELFHSITQSKISIPIISEDYASSKWCLHELAHMLKCKRNGGQTVLPIFYKVEPSQLRNPSGRLRDAINAHKKKLGKIVAEEWEQVLKE

ProfileScan: PS50104
IPR000157
62-201 TIR
Toll/interleukin-1 receptor homology (TIR) domain

NDYEVFLSFRGKDTRKGFTDYLYTSLVDARVHVFRDDNELRVGEEIGPELFHSITQSKISIPIISEDYASSKWCLHELAHMLKCKRNGGQTVLPIFYKVEPSQLRNPSGRLRDAINAHKKKLGKIVAEEWEQVLKEVSCL

HMMSmart: SM00255
IPR000157
63-201 Toll
Toll/interleukin-1 receptor homology (TIR) domain

DYEVFLSFRGKDTRKGFTDYLYTSLVDARVHVFRDDNELRVGEEIGPELFHSITQSKISIPIISEDYASSKWCLHELAHMLKCKRNGGQTVLPIFYKVEPSQLRNPSGRLRDAINAHKKKLGKIVAEEWEQVLKEVSCL

HMMPfam: PF01582
IPR000157
66-196 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFRGKDTRKGFTDYLYTSLVDARVHVFRDDNELRVGEEIGPELFHSITQSKISIPIISEDYASSKWCLHELAHMLKCKRNGGQTVLPIFYKVEPSQLRNPSGRLRDAINAHKKKLGKIVAEEWEQVLK






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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