PRGDB00160275 (Egrandis_v1_0.038207m)

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Egrandis_v1_0.038207m
Gene Type Putative_R-Genes,_predicted_from_Pythozome
GenBank
Gene Class T
Domain Type TIR, LRR
Gene Species Areca catechu

Comment?

Disease resistance protein (TIR-NBS-LRR class) family (best arabidopsis hit)

DNA Sequence

ATGTCGTCCTGGAAAGATTTTCGGATATTACCTTCATACGATGTGTTCCTAAGCTTTTGGGGACAAGACACTGGGCATGGCTTTACCCATGCCCTTTACAATGGACTGGTTGCCTGTGGTAATTCTGTTTGTAGGGACGATCATGAATTGAGCTTTGATAATGGAATTGGTGAACAGATGGAGCGAGCGATTGAGGCCTCTCCCATCTTTATACCTATCTTCAGTTCGAACTATGCTTCCAGTCAGGGGCGTCTCCGTGCACTCACCCACATGGTAAAATGCATGTCAAAGTCAAAGGGCCAAAAAAGAATCCTCCCCATTTTCTATGACGTCGAGATTTATGATGTTAAGCTCGAAAGCATTGTATACCAGAAAGTCCTAGACAGGCACCGGAAGAATTTCCGCCACGACGAAGTGAAGGCATGGGAAGAGGCTCTGAAAAAGACTGCACTCATCAGGGGATTCCAAGTGAAGAAAGATGAA


Protein sequences

Name Description Sequence
Egrandis_v1_0.038207m Disease resistance protein (TIR-NBS-LRR class) family (best arabidopsis hit)

MSSWKDFRILPSYDVFLSFWGQDTGHGFTHALYNGLVACGNSVCRDDHELSFDNGIGEQMERAIEASPIFIPIFSSNYASSQGRLRALTHMVKCMSKSKGQKRILPIFYDVEIYDVKLESIVYQKVLDRHRKNFRHDEVKAWEEALKKTALIRGFQVKKDE

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
1-155 Toll/Interleukin receptor TIR domain
Toll/interleukin-1 receptor homology (TIR) domain

MSSWKDFRILPSYDVFLSFWGQDTGHGFTHALYNGLVACGNSVCRDDHELSFDNGIGEQMERAIEASPIFIPIFSSNYASSQGRLRALTHMVKCMSKSKGQKRILPIFYDVEIYDVKLESIVYQKVLDRHRKNFRHDEVKAWEEALKKTALIRGF

ProfileScan: PS50104
IPR000157
11-152 TIR
Toll/interleukin-1 receptor homology (TIR) domain

PSYDVFLSFWGQDTGHGFTHALYNGLVACGNSVCRDDHELSFDNGIGEQMERAIEASPIFIPIFSSNYASSQGRLRALTHMVKCMSKSKGQKRILPIFYDVEIYDVKLESIVYQKVLDRHRKNFRHDEVKAWEEALKKTALI

HMMSmart: SM00255
IPR000157
12-152 Toll
Toll/interleukin-1 receptor homology (TIR) domain

SYDVFLSFWGQDTGHGFTHALYNGLVACGNSVCRDDHELSFDNGIGEQMERAIEASPIFIPIFSSNYASSQGRLRALTHMVKCMSKSKGQKRILPIFYDVEIYDVKLESIVYQKVLDRHRKNFRHDEVKAWEEALKKTALI

Gene3D: G3DSA:3.40.50.10140
12-148 no description

SYDVFLSFWGQDTGHGFTHALYNGLVACGNSVCRDDHELSFDNGIGEQMERAIEASPIFIPIFSSNYASSQGRLRALTHMVKCMSKSKGQKRILPIFYDVEIYDVKLESIVYQKVLDRHRKNFRHDEVKAWEEALKK

HMMPfam: PF01582
IPR000157
15-147 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFWGQDTGHGFTHALYNGLVACGNSVCRDDHELSFDNGIGEQMERAIEASPIFIPIFSSNYASSQGRLRALTHMVKCMSKSKGQKRILPIFYDVEIYDVKLESIVYQKVLDRHRKNFRHDEVKAWEEALK






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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