PRGDB00160365 (Egrandis_v1_0.051509m)

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Egrandis_v1_0.051509m
Gene Type Putative_R-Genes,_predicted_from_Pythozome
GenBank
Gene Class T
Domain Type TIR, LRR
Gene Species Areca catechu

Comment?

Disease resistance protein (TIR-NBS class) (best arabidopsis hit)

DNA Sequence

ATGGCAACTGGAAACTGCTATGAGGTGTTCTTGAGCTTTAGAGGCTTAGATACTCGAAAAGGCTTCACTGATCACCTCTACACCAGACTTGTTGATGCTGGAATTCATGCTTTCAAAGATGATAATGAGCTCCGCCATGGCAAGAAGATTGGGCCAGATCTTTTGACAGCCATCAAGAACAGTAAGATCCTGATCCCCATTATCTCCTTGAATTATGGGTCGAGCAGTTGGTGCCTAAATGAACTGGTTCAAATAATGGAGTGCCAGAATAGTAACATCGGGCATCTAGTGTTGCCTATATTTACAAAGTGGGAACCAACTCACGTGCGTCATCAAATCGGGAGTTTTTGGAGATGTGTTTCGTATGCATGA


Protein sequences

Name Description Sequence
Egrandis_v1_0.051509m Disease resistance protein (TIR-NBS class) (best arabidopsis hit)

MATGNCYEVFLSFRGLDTRKGFTDHLYTRLVDAGIHAFKDDNELRHGKKIGPDLLTAIKNSKILIPIISLNYGSSSWCLNELVQIMECQNSNIGHLVLPIFTKWEPTHVRHQIGSFWRCVSYA*

Domains

Domain Start-End Description Sequence

Gene3D: G3DSA:3.40.50.10140
4-116 no description

GNCYEVFLSFRGLDTRKGFTDHLYTRLVDAGIHAFKDDNELRHGKKIGPDLLTAIKNSKILIPIISLNYGSSSWCLNELVQIMECQNSNIGHLVLPIFTKWEPTHVRHQIGSF

ProfileScan: PS50104
IPR000157
5-123 TIR
Toll/interleukin-1 receptor homology (TIR) domain

NCYEVFLSFRGLDTRKGFTDHLYTRLVDAGIHAFKDDNELRHGKKIGPDLLTAIKNSKILIPIISLNYGSSSWCLNELVQIMECQNSNIGHLVLPIFTKWEPTHVRHQIGSFWRCVSYA

HMMSmart: SM00255
IPR000157
6-123 Toll
Toll/interleukin-1 receptor homology (TIR) domain

CYEVFLSFRGLDTRKGFTDHLYTRLVDAGIHAFKDDNELRHGKKIGPDLLTAIKNSKILIPIISLNYGSSSWCLNELVQIMECQNSNIGHLVLPIFTKWEPTHVRHQIGSFWRCVSYA

superfamily: SSF52200
IPR000157
7-116 Toll/Interleukin receptor TIR domain
Toll/interleukin-1 receptor homology (TIR) domain

YEVFLSFRGLDTRKGFTDHLYTRLVDAGIHAFKDDNELRHGKKIGPDLLTAIKNSKILIPIISLNYGSSSWCLNELVQIMECQNSNIGHLVLPIFTKWEPTHVRHQIGSF

HMMPfam: PF01582
IPR000157
9-117 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFRGLDTRKGFTDHLYTRLVDAGIHAFKDDNELRHGKKIGPDLLTAIKNSKILIPIISLNYGSSSWCLNELVQIMECQNSNIGHLVLPIFTKWEPTHVRHQIGSFW






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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