PRGDB00160430 (Egrandis_v1_0.032783m)

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Egrandis_v1_0.032783m
Gene Type Putative_R-Genes,_predicted_from_Pythozome
GenBank
Gene Class T
Domain Type TIR, LRR
Gene Species Areca catechu

Comment?

disease resistance protein (TIR-NBS class), putative (best arabidopsis hit)

DNA Sequence

ATGTCGAGCTCGAGCCCGGAGGCCTCCGGCGACGCTCCGCCCTTGTCCTTCTGGCCGTCCATGCGGGTAAGACGTGTTCCTAAGCTTCCATGGAGCCATAGGGGGTCGAGGATCTCGGTCGTCGTGTTCTCGGAGAACTACGGGTCCTCTGGCTGGTGCTTGGACGAGCTGGTGAGAATCGTCGAGTGCAGGGATACGATGGGGCAGATCTTGTGGCCGCTGTTCGACAAGGTGGATCCGTCGGAGGTGAGGAACCAGAGGGGGAGGTATGGACAAGCCCTAATCGGTCACGACGAAAGGTTGAAGTCGAAGGGCGATTCAGGGAAGGTGAAGAGGTGA


Protein sequences

Name Description Sequence
Egrandis_v1_0.032783m disease resistance protein (TIR-NBS class), putative (best arabidopsis hit)

MSSSSPEASGDAPPLSFWPSMRVRRVPKLPWSHRGSRISVVVFSENYGSSGWCLDELVRIVECRDTMGQILWPLFDKVDPSEVRNQRGRYGQALIGHDERLKSKGDSGKVKR*

Domains

Domain Start-End Description Sequence

ProfileScan: PS50104
IPR000157
33-112 TIR
Toll/interleukin-1 receptor homology (TIR) domain

HRGSRISVVVFSENYGSSGWCLDELVRIVECRDTMGQILWPLFDKVDPSEVRNQRGRYGQALIGHDERLKSKGDSGKVKR

HMMPfam: PF01582
IPR000157
34-104 TIR
Toll/interleukin-1 receptor homology (TIR) domain

RGSRISVVVFSENYGSSGWCLDELVRIVECRDTMGQILWPLFDKVDPSEVRNQRGRYGQALIGHDERLKSK

superfamily: SSF52200
IPR000157
34-105 Toll/Interleukin receptor TIR domain
Toll/interleukin-1 receptor homology (TIR) domain

RGSRISVVVFSENYGSSGWCLDELVRIVECRDTMGQILWPLFDKVDPSEVRNQRGRYGQALIGHDERLKSKG

Gene3D: G3DSA:3.40.50.10140
34-98 no description

RGSRISVVVFSENYGSSGWCLDELVRIVECRDTMGQILWPLFDKVDPSEVRNQRGRYGQALIGHD






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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