PRGDB00160663 (Glyma09g33230.1)
| Glyma09g33230.1 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_Pythozome |
| GenBank | |
| Gene Class | CN |
| Domain Type | Ser-Thr Kinase, NBS |
| Gene Species | Glycine max |
DNA Sequence
ATGGATGCAATCCAAACCGAGAAAATCTACGTTGCTGTTGGTAATGATGTGCAAGATGGACTTAAGACTTTGAATTGGGCTCTCAAGAAGTGGAATTCTCATCCAATTTCCATTGCTGTTCTCCATGTCACACACAATAGTACCAAGGATTATGTCTATACACCATTTGGGAAACTTCCTGCAAGATCTGTGAGTGAGGAGAAACTACAAATTCTCAGGAAAGATGAGCAGGATAAAATCAACAAGCTGCTTTCCAAGTATATTGCTTTTTGTGGCAAGTGGTTCAGTCTAACTATAGTCTTCTGTTTCTGCATATTACAGGTGCCAGCAGAGATTCTTGAAGTTGAGAAATTTGATGAACCTATGCAAAAGCGCGTCATAGACTTGATCTTTGGTCTAGGAATAACCAAATTGGTCATGGGATTTTCATTCATGAAGCCATCCATGAAATCTAAAGGTGCTATTAGTGGATTGTTCTATGTTCATCAGCACAAGCCTTCCTTCTGTGAATTGTTCATTATTTGTGGAGGGAAGCAAGTTTTCCTCAGAGGAAAAAATGATGAGAAAATCATGGAGGATGATCGCGGGGTCATGAATAGAAGTACATCACTTTCCTCAACCAATTTGGAGTCCCCTCTGAACCAAAACCAGTGGGAATTTTACCTCCAGGAAATTGAAAAATACTATCAAGAATTGTTGTCTTCGAACTTGGAGGAAGGAAACTGCGTGCTAGAAAATGACGACTCACAGATTGGACCAATTGAGCCACATAGTGCTGCGGATAAAATTGAGATCCTGAAAAATAAGCTTAATGAAGCTCAGAAGATTATCCAATTAAAGAGGAAAGAAGCCAAGGATAATATAGAGAGGCATACTAAAGCTGAATGGGCAATTTGTTTATGCAACAGTCGGGCCGAAGAACTGGAAAGTCGAATACGAGAAGAGGCGAGTGCAAGAGAGGAGCTAAAGAAGGAATCAGACGCAGAGAAAGAGCAAACAGTGGAGATGAAAACGGAGCTGGAAGAGAGGAAGAGGAGCCTGAGATCCCTGACGGAAGTTCAATCGGAGCTCTCAAACAGGCTTCAAATATGGACGTTGGCGAAGACGCGGGCGGAGACGCAGCTGGAGAAGGCGGTGGGGGAGAGGAGCGAGATGGTGAGGGAGATAGAGGAGCTGAGGCGGCAGAGGGACGTGTTCAATCGGAGGATCGAGTTTTGCAAGGAGAAGGACGCCATCGGAATGGCCGCGAGCCTCGCCGAGATGACGTGCTGCGCATTCAGGGAGTACACCGAGGAGGAGCTCCGGTTGGCGACGGATAACTTCTCCGACCGCCTCAGGTTCAAGTCCGGCGGGGATTGGACTAATGTGTATAGAGGACGCTTTAACCATTCCTCTGTTGCTATCAAGATGCTTCCTTCTTTGTCACACCAACATTTCCAATCCAAGGTGAGGCTTCTTGGTGATATTAGGCAACCTCATCTGGTTGCCATGGTAGGCTTTTGCTCCGAGCCCAAATGCATAGTTTTGGAATACATGGGCAATGGAAGCTTACGTGACATGCTGTTTTCTAGGAGAAGAAACCGGGTCTTACGATGGCATGACCGAATACGAATAGCCACGGAAGTTTGTTCGGGTCTGGGCTTTCTCAATGCAGCTGAGTTGAGGCCCGCTATTCATTGTCATTTGAGCTCATCAAAAATCCTCTTAGACCGCAATTTGGTTGCAAAGATCACGGGCTTTGGGCTTCTTGAATGCCATGATGAGCAATGTAACGTTGAGTCAGATTTGCAAGCCATAGGGGTTTTGTTGATACATCTTCTGACGGGAAGAAATTGGGCCGGGCTCGTCGAGGAGGTGATGACAGTGGATATGGATAGGAAGGCTTTGGGTAGTGTTCTTGATGAGATGGCTGGACAATGGCCATTGGATCTTGCAAGGGAACTTGCTGCCCTGGCTATGAGGTGCATGTCCATCAAAGCCAAACCCAACTCAGAACTCAGCATTGCTAGGGTTTTAGAGGAACTCAATGAGATAAGAAGAAACGGGGATGAAATAGTTGAAAGGGAAGGGCCAAAGACAATTATTGGTGGATGTATAGATAGGGCAGGTTCCAGTGATATGCCTAGTGTTTTCCTTTGCCCCATACTTCAGGAGGCAATGACAAACCCACACGTGGCAGCAGATGGATTTTCTTATGAGCTAGAAGCAATAGAACACTGGCTGCAGTCGGGGCGTGACACATCACCAATGACAAATTTGAGGCTGAAGCACACATTCCTCACCCCTAATCACACCCTTCGTTCCCTAATTCAGGACTGGCAGACCAACAAATCAACCTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Glyma09g33230.1 | U-box domain-containing protein kinase family protein (best arabidopsis hit) | MDAIQTEKIYVAVGNDVQDGLKTLNWALKKWNSHPISIAVLHVTHNSTKDYVYTPFGKLPARSVSEEKLQILRKDEQDKINKLLSKYIAFCGKWFSLTIVFCFCILQVPAEILEVEKFDEPMQKRVIDLIFGLGITKLVMGFSFMKPSMKSKGAISGLFYVHQHKPSFCELFIICGGKQVFLRGKNDEKIMEDDRGVMNRSTSLSSTNLESPLNQNQWEFYLQEIEKYYQELLSSNLEEGNCVLENDDSQIGPIEPHSAADKIEILKNKLNEAQKIIQLKRKEAKDNIERHTKAEWAICLCNSRAEELESRIREEASAREELKKESDAEKEQTVEMKTELEERKRSLRSLTEVQSELSNRLQIWTLAKTRAETQLEKAVGERSEMVREIEELRRQRDVFNRRIEFCKEKDAIGMAASLAEMTCCAFREYTEEELRLATDNFSDRLRFKSGGDWTNVYRGRFNHSSVAIKMLPSLSHQHFQSKVRLLGDIRQPHLVAMVGFCSEPKCIVLEYMGNGSLRDMLFSRRRNRVLRWHDRIRIATEVCSGLGFLNAAELRPAIHCHLSSSKILLDRNLVAKITGFGLLECHDEQCNVESDLQAIGVLLIHLLTGRNWAGLVEEVMTVDMDRKALGSVLDEMAGQWPLDLARELAALAMRCMSIKAKPNSELSIARVLEELNEIRRNGDEIVEREGPKTIIGGCIDRAGSSDMPSVFLCPILQEAMTNPHVAADGFSYELEAIEHWLQSGRDTSPMTNLRLKHTFLTPNHTLRSLIQDWQTNKST* |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Coil: coil | 263-288 | coiled-coil | IEILKNKLNEAQKIIQLKRKEAKDNI |
| Seg: seg | 303-322 | seg | SRAEELESRIREEASAREEL |
| Coil: coil | 305-344 | coiled-coil | AEELESRIREEASAREELKKESDAEKEQTVEMKTELEERK |
| Coil: coil | 375-410 | coiled-coil | LEKAVGERSEMVREIEELRRQRDVFNRRIEFCKEKD |
| HMMPanther: PTHR24420 | 378-753 | FAMILY NOT NAMED,FAMILY NOT NAMED | AVGERSEMVREIEELRRQRDVFNRRIEFCKEKDAIGMAASLAEMTCCAFREYTEEELRLATDNFSDRLRFKSGGDWTNVYRGRFNHSSVAIKMLPSLSHQHFQSKVRLLGDIRQPHLVAMVGFCSEPKCIVLEYMGNGSLRDMLFSRRRNRVLRWHDRIRIATEVCSGLGFLNAAELRPAIHCHLSSSKILLDRNLVAKITGFGLLECHDEQCNVESDLQAIGVLLIHLLTGRNWAGLVEEVMTVDMDRKALGSVLDEMAGQWPLDLARELAALAMRCMSIKAKPNSELSIARVLEELNEIRRNGDEIVEREGPKTIIGGCIDRAGSSDMPSVFLCPILQEAMTNPHVAADGFSYELEAIEHWLQSGRDTSPMTNL |
| HMMPanther: PTHR24420:SF934 | 378-753 | PROTEIN KINASE FAMILY PROTEIN | AVGERSEMVREIEELRRQRDVFNRRIEFCKEKDAIGMAASLAEMTCCAFREYTEEELRLATDNFSDRLRFKSGGDWTNVYRGRFNHSSVAIKMLPSLSHQHFQSKVRLLGDIRQPHLVAMVGFCSEPKCIVLEYMGNGSLRDMLFSRRRNRVLRWHDRIRIATEVCSGLGFLNAAELRPAIHCHLSSSKILLDRNLVAKITGFGLLECHDEQCNVESDLQAIGVLLIHLLTGRNWAGLVEEVMTVDMDRKALGSVLDEMAGQWPLDLARELAALAMRCMSIKAKPNSELSIARVLEELNEIRRNGDEIVEREGPKTIIGGCIDRAGSSDMPSVFLCPILQEAMTNPHVAADGFSYELEAIEHWLQSGRDTSPMTNL |
| Gene3D: G3DSA:3.30.200.20 | 427-499 | no description | REYTEEELRLATDNFSDRLRFKSGGDWTNVYRGRFNHSSVAIKMLPSLSHQHFQSKVRLLGDIRQPHLVAMVG |
| superfamily: SSF56112 IPR011009
|
430-704 | Protein kinase-like (PK-like) Protein kinase-like domain
|
TEEELRLATDNFSDRLRFKSGGDWTNVYRGRFNHSSVAIKMLPSLSHQHFQSKVRLLGDIRQPHLVAMVGFCSEPKCIVLEYMGNGSLRDMLFSRRRNRVLRWHDRIRIATEVCSGLGFLNAAELRPAIHCHLSSSKILLDRNLVAKITGFGLLECHDEQCNVESDLQAIGVLLIHLLTGRNWAGLVEEVMTVDMDRKALGSVLDEMAGQWPLDLARELAALAMRCMSIKAKPNSELSIARVLEELNEIRRNGDEIVEREGPKTIIGGCIDRAGS |
| HMMSmart: SM00220 IPR002290
|
442-672 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
SDRLRFKSGGDWTNVYRGRFNHSSVAIKMLPSLSHQHFQSKVRLLGDIRQPHLVAMVGFCSEPKCIVLEYMGNGSLRDMLFSRRRNRVLRWHDRIRIATEVCSGLGFLNAAELRPAIHCHLSSSKILLDRNLVAKITGFGLLECHDEQCNVESDLQAIGVLLIHLLTGRNWAGLVEEVMTVDMDRKALGSVLDEMAGQWPLDLARELAALAMRCMSIKAKPNSELSIARVL |
| ProfileScan: PS50011 IPR000719
|
442-695 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
SDRLRFKSGGDWTNVYRGRFNHSSVAIKMLPSLSHQHFQSKVRLLGDIRQPHLVAMVGFCSEPKCIVLEYMGNGSLRDMLFSRRRNRVLRWHDRIRIATEVCSGLGFLNAAELRPAIHCHLSSSKILLDRNLVAKITGFGLLECHDEQCNVESDLQAIGVLLIHLLTGRNWAGLVEEVMTVDMDRKALGSVLDEMAGQWPLDLARELAALAMRCMSIKAKPNSELSIARVLEELNEIRRNGDEIVEREGPKTII |
| HMMSmart: SM00219 IPR020635
|
445-675 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
LRFKSGGDWTNVYRGRFNHSSVAIKMLPSLSHQHFQSKVRLLGDIRQPHLVAMVGFCSEPKCIVLEYMGNGSLRDMLFSRRRNRVLRWHDRIRIATEVCSGLGFLNAAELRPAIHCHLSSSKILLDRNLVAKITGFGLLECHDEQCNVESDLQAIGVLLIHLLTGRNWAGLVEEVMTVDMDRKALGSVLDEMAGQWPLDLARELAALAMRCMSIKAKPNSELSIARVLEEL |
| HMMPfam: PF07714 IPR001245
|
451-589 | Pkinase_Tyr Serine-threonine/tyrosine-protein kinase catalytic
|
GDWTNVYRGRFNHSSVAIKMLPSLSHQHFQSKVRLLGDIRQPHLVAMVGFCSEPKCIVLEYMGNGSLRDMLFSRRRNRVLRWHDRIRIATEVCSGLGFLNAAELRPAIHCHLSSSKILLDRNLVAKITGFGLLECHDEQ |
| Gene3D: G3DSA:1.10.510.10 | 500-584 | no description | FCSEPKCIVLEYMGNGSLRDMLFSRRRNRVLRWHDRIRIATEVCSGLGFLNAAELRPAIHCHLSSSKILLDRNLVAKITGFGLLE |
| Gene3D: G3DSA:3.30.40.10 IPR013083
|
706-777 | no description Zinc finger, RING/FYVE/PHD-type
|
DMPSVFLCPILQEAMTNPHVAADGFSYELEAIEHWLQSGRDTSPMTNLRLKHTFLTPNHTLRSLIQDWQTNK |
| superfamily: SSF57850 | 706-778 | RING/U-box,NBS | DMPSVFLCPILQEAMTNPHVAADGFSYELEAIEHWLQSGRDTSPMTNLRLKHTFLTPNHTLRSLIQDWQTNKS |
| HMMPfam: PF04564 IPR003613
|
708-778 | U-box U box domain
|
PSVFLCPILQEAMTNPHVAADGFSYELEAIEHWLQSGRDTSPMTNLRLKHTFLTPNHTLRSLIQDWQTNKS |
| HMMSmart: SM00504 IPR003613
|
710-773 | Modified RING finger domain U box domain
|
VFLCPILQEAMTNPHVAADGFSYELEAIEHWLQSGRDTSPMTNLRLKHTFLTPNHTLRSLIQDW |
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