PRGDB00163018 (Egrandis_v1_0.023118m)

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Egrandis_v1_0.023118m
Gene Type Putative_R-Genes,_predicted_from_Pythozome
GenBank
Gene Class T
Domain Type TIR, LRR
Gene Species Areca catechu

Comment?

Disease resistance protein (TIR-NBS-LRR class) family (best arabidopsis hit)

DNA Sequence

ATGGCTCTGCAACTGTGGGAGCCCCTCAAAGAATCCATTGTCGCCTTCACGGGCCTGTCCCCGGCGACTTTCTTCACTGTCCTTGCCCTCGGGCTCGCTGTCTACTATGTCGTGTCCGGCCTCTTCGGGTCATTACCCGACCGCCACCAGAGGCCGAGGGACTACCAGGAACAGATGCAGCCTCTCCCTCCTCCTGTTCAGCTTGTCGAGACCTCCGAGGACGAGCTCAAGCAGTACGACGGCAGCGACCCCAAGAAGTCTCTCTTGATGGCCAACAGGGCGCAGATCTACGATGTCTCTCAACGCAGAAGGAGCTATGATGTTTTTCTGAGTTTTAGAGGCACAGACGTCCGCAACTATTTCCTCGGTCATCTCTACACAGCTCTTGTTCAAAATGGAATAAACACTTACATGGACAACGAAGATCTAAAAAAGGGAGAGCAAATATCACTCGCACTTATGGAGGCAATCAAGGAATCGCAAATGGCAATCGTTGTTTTCTCCAAGGACTATGCATCATCAACATGGTGTTTGGAGGAGGTGGCGAAAATCATGGAGTGTAAGGAGAAAAGAGGCCTCATGGTCTTTCCGGTGTTTTACAAAGTAGAACCTAGAGAAGTGAGAGGGCAGAAACAGGATTATGGAGAGGATTATGGAGAAGTTATGGCCAAACATGAGGTCAAGTTTGGAAAGGATTCAGAGAAAGTAAAGCGATGGAAAAAAGCTCTTCTTGATGTTGGTAACTTGTCTGGATTGCATTTTGTCGACGGGTATGTGACAACACTTCTACTTCAATTAATGTAA


Protein sequences

Name Description Sequence
Egrandis_v1_0.023118m Disease resistance protein (TIR-NBS-LRR class) family (best arabidopsis hit)

MALQLWEPLKESIVAFTGLSPATFFTVLALGLAVYYVVSGLFGSLPDRHQRPRDYQEQMQPLPPPVQLVETSEDELKQYDGSDPKKSLLMANRAQIYDVSQRRRSYDVFLSFRGTDVRNYFLGHLYTALVQNGINTYMDNEDLKKGEQISLALMEAIKESQMAIVVFSKDYASSTWCLEEVAKIMECKEKRGLMVFPVFYKVEPREVRGQKQDYGEDYGEVMAKHEVKFGKDSEKVKRWKKALLDVGNLSGLHFVDGYVTTLLLQLM*

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR10281:SF26
1-106 MEMBRANE STEROID BINDING PROTEIN,MEMBRANE STEROID BINDING PROTEIN

MALQLWEPLKESIVAFTGLSPATFFTVLALGLAVYYVVSGLFGSLPDRHQRPRDYQEQMQPLPPPVQLVETSEDELKQYDGSDPKKSLLMANRAQIYDVSQRRRSY

HMMPanther: PTHR10281
1-106 MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED,MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED

MALQLWEPLKESIVAFTGLSPATFFTVLALGLAVYYVVSGLFGSLPDRHQRPRDYQEQMQPLPPPVQLVETSEDELKQYDGSDPKKSLLMANRAQIYDVSQRRRSY

Seg: seg
27-38 seg

VLALGLAVYYVV

Seg: seg
56-70 seg

QEQMQPLPPPVQLVE

HMMPfam: PF00173
IPR001199
72-169 Cyt-b5
Cytochrome b5

SEDELKQYDGSDPKKSLLMANRAQIYDVSQRRRSYDVFLSFRGTDVRNYFLGHLYTALVQNGINTYMDNEDLKKGEQISLALMEAIKESQMAIVVFSK

superfamily: SSF52200
IPR000157
94-252 Toll/Interleukin receptor TIR domain
Toll/interleukin-1 receptor homology (TIR) domain

AQIYDVSQRRRSYDVFLSFRGTDVRNYFLGHLYTALVQNGINTYMDNEDLKKGEQISLALMEAIKESQMAIVVFSKDYASSTWCLEEVAKIMECKEKRGLMVFPVFYKVEPREVRGQKQDYGEDYGEVMAKHEVKFGKDSEKVKRWKKALLDVGNLSGL

Gene3D: G3DSA:3.40.50.10140
101-242 no description

QRRRSYDVFLSFRGTDVRNYFLGHLYTALVQNGINTYMDNEDLKKGEQISLALMEAIKESQMAIVVFSKDYASSTWCLEEVAKIMECKEKRGLMVFPVFYKVEPREVRGQKQDYGEDYGEVMAKHEVKFGKDSEKVKRWKKA

ProfileScan: PS50104
IPR000157
104-249 TIR
Toll/interleukin-1 receptor homology (TIR) domain

RSYDVFLSFRGTDVRNYFLGHLYTALVQNGINTYMDNEDLKKGEQISLALMEAIKESQMAIVVFSKDYASSTWCLEEVAKIMECKEKRGLMVFPVFYKVEPREVRGQKQDYGEDYGEVMAKHEVKFGKDSEKVKRWKKALLDVGNL

HMMSmart: SM00255
IPR000157
105-249 Toll
Toll/interleukin-1 receptor homology (TIR) domain

SYDVFLSFRGTDVRNYFLGHLYTALVQNGINTYMDNEDLKKGEQISLALMEAIKESQMAIVVFSKDYASSTWCLEEVAKIMECKEKRGLMVFPVFYKVEPREVRGQKQDYGEDYGEVMAKHEVKFGKDSEKVKRWKKALLDVGNL

HMMPfam: PF01582
IPR000157
108-243 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFRGTDVRNYFLGHLYTALVQNGINTYMDNEDLKKGEQISLALMEAIKESQMAIVVFSKDYASSTWCLEEVAKIMECKEKRGLMVFPVFYKVEPREVRGQKQDYGEDYGEVMAKHEVKFGKDSEKVKRWKKAL






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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