PRGDB00163141 (Egrandis_v1_0.022959m)

From PRG Wiki
Jump to: navigation, search
Egrandis_v1_0.022959m
Gene Type Putative_R-Genes,_predicted_from_Pythozome
GenBank
Gene Class T
Domain Type TIR, LRR
Gene Species Areca catechu

Comment?

Disease resistance protein (TIR-NBS-LRR class) family (best arabidopsis hit)

DNA Sequence

ATGCAGCCTCTCCCTCCTCCTGTTCAGCTTGTCGAGACCTCCGAGGACAAGCTCAAGCAGTACGACGGCACCGACCCTAAGAAGTCTCTCTTGATGGCCAACAGGGGGCAGATTTACGATGTCTCTCAGCGCAGAAGGAGCTATGATGTCTTTCTGAGTTTTAGAGGCACGGACGTCCGCAACTATTTCCTCAGTCATCTTTACACAGCTCTTGTTCAAAGTGGAATAAACACTTACGTGGACAATGAAGATCTAAAGAAGGGAGAGCAAATATCAACCGCACTCATGAAGGCAATCGAGGAATCGCAAATTGCGATCGTTGTTTTCTCCAAGAACTATGCCTCATCACTGTGGTGTTTGGAGGAGGTGGCAAAAATCATGGAGTGCAAGGAGCAAAGAGGCCTCATGGTCTTTCCGGTGTTTTACAAAGTGGAACCTAGAGAAGTGAGAAGGCAGAGACAGGATTATGTTTATACAGAAGCTATGGCCAAACATGAGGTCAAGTTTGGGAAGGATTCAGAGAAAGTAAAGCGATGGAAGAATGCTCTTCTTGATGCTGGGAGCTTGTCTGGATGGCCTTTTATGGATGGGCCCAATACTTCTTTTTCTCATCAATCGATGATGCCATCCCGTTTTCTCGGTGACCGTACGTCAGCTCACCACTTGCCGTCGGCGACCTCGAGGAGCGGCGACCGGCGATTTCGATCGATAGATTCGGTAGCCGTTCGTCGGAATCAACCTCATGGAGCTTCATCTCTCCATATTCGATACGCTTACTCCAAAGATGGTGGAGCGAGCGATTGTAGGGCCTAA


Protein sequences

Name Description Sequence
Egrandis_v1_0.022959m Disease resistance protein (TIR-NBS-LRR class) family (best arabidopsis hit)

MQPLPPPVQLVETSEDKLKQYDGTDPKKSLLMANRGQIYDVSQRRRSYDVFLSFRGTDVRNYFLSHLYTALVQSGINTYVDNEDLKKGEQISTALMKAIEESQIAIVVFSKNYASSLWCLEEVAKIMECKEQRGLMVFPVFYKVEPREVRRQRQDYVYTEAMAKHEVKFGKDSEKVKRWKNALLDAGSLSGWPFMDGPNTSFSHQSMMPSRFLGDRTSAHHLPSATSRSGDRRFRSIDSVAVRRNQPHGASSLHIRYAYSKDGGASDCRA*

Domains

Domain Start-End Description Sequence

Gene3D: G3DSA:3.10.120.10
IPR001199
13-53 no description
Cytochrome b5

TSEDKLKQYDGTDPKKSLLMANRGQIYDVSQRRRSYDVFLS

HMMPfam: PF00173
IPR001199
14-76 Cyt-b5
Cytochrome b5

SEDKLKQYDGTDPKKSLLMANRGQIYDVSQRRRSYDVFLSFRGTDVRNYFLSHLYTALVQSGI

superfamily: SSF52200
IPR000157
36-192 Toll/Interleukin receptor TIR domain
Toll/interleukin-1 receptor homology (TIR) domain

GQIYDVSQRRRSYDVFLSFRGTDVRNYFLSHLYTALVQSGINTYVDNEDLKKGEQISTALMKAIEESQIAIVVFSKNYASSLWCLEEVAKIMECKEQRGLMVFPVFYKVEPREVRRQRQDYVYTEAMAKHEVKFGKDSEKVKRWKNALLDAGSLSGW

ProfileScan: PS50104
IPR000157
46-189 TIR
Toll/interleukin-1 receptor homology (TIR) domain

RSYDVFLSFRGTDVRNYFLSHLYTALVQSGINTYVDNEDLKKGEQISTALMKAIEESQIAIVVFSKNYASSLWCLEEVAKIMECKEQRGLMVFPVFYKVEPREVRRQRQDYVYTEAMAKHEVKFGKDSEKVKRWKNALLDAGSL

HMMSmart: SM00255
IPR000157
47-189 Toll
Toll/interleukin-1 receptor homology (TIR) domain

SYDVFLSFRGTDVRNYFLSHLYTALVQSGINTYVDNEDLKKGEQISTALMKAIEESQIAIVVFSKNYASSLWCLEEVAKIMECKEQRGLMVFPVFYKVEPREVRRQRQDYVYTEAMAKHEVKFGKDSEKVKRWKNALLDAGSL

HMMPfam: PF01582
IPR000157
50-183 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFRGTDVRNYFLSHLYTALVQSGINTYVDNEDLKKGEQISTALMKAIEESQIAIVVFSKNYASSLWCLEEVAKIMECKEQRGLMVFPVFYKVEPREVRRQRQDYVYTEAMAKHEVKFGKDSEKVKRWKNAL

Gene3D: G3DSA:3.40.50.10140
54-183 no description

FRGTDVRNYFLSHLYTALVQSGINTYVDNEDLKKGEQISTALMKAIEESQIAIVVFSKNYASSLWCLEEVAKIMECKEQRGLMVFPVFYKVEPREVRRQRQDYVYTEAMAKHEVKFGKDSEKVKRWKNAL

HMMPanther: PTHR23155
59-183 FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VRNYFLSHLYTALVQSGINTYVDNEDLKKGEQISTALMKAIEESQIAIVVFSKNYASSLWCLEEVAKIMECKEQRGLMVFPVFYKVEPREVRRQRQDYVYTEAMAKHEVKFGKDSEKVKRWKNAL

HMMPanther: PTHR23155:SF252
59-183 SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED

VRNYFLSHLYTALVQSGINTYVDNEDLKKGEQISTALMKAIEESQIAIVVFSKNYASSLWCLEEVAKIMECKEQRGLMVFPVFYKVEPREVRRQRQDYVYTEAMAKHEVKFGKDSEKVKRWKNAL






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox