PRGDB00172404 (ppa022040m)

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ppa022040m
Gene Type Putative_R-Genes,_predicted_from_Pythozome
GenBank
Gene Class Unknown
Domain Type LRR
Gene Species Prunus persica

Comment?

disease resistance family protein / LRR family protein (best arabidopsis hit)

DNA Sequence

ATGAAGTATGAACAGTCTTGTTTGGGGGTTAAGATAAACTCTCCTTTGCTTAGCTTGAAACATTTGATTCACATTCCTAAGTTCTTTGGGGAGCTTAAAACTCTGACGTATCTCAATATCTCCTTTGCATTGTTTACAGGAGAGATTTCCCCTTCTCTTGGTAATTTCTTGATTGAAAGCCTTCCACTATCACTGCATAGGGTTAACTTCACCTCACTTTTGGTCCTTGATGTATCATATAATTCCCTCAATACTTCTTCATTTCCCAGCTGGCTTTTCAATCTTACTAGCCTTAAAAAACTTGATCTAAGCTGGAATTCTTTCACTAGTCCTTTTCCAGAAAGTCTCGGACAACTCTCCAAGCTAGTTGAACCAGATTTATCTTCCAATCCTTGGGAAGGATTTCTAACGGAAGCCCATTTCACAAGTCTCACCAGATTGAAACATCTTTCAATAAGGAACAATTTAATAGAGAAGCTTGTGTCCCTCGTTTTCAACGTGGCTTATGATTGGGTTCCTCCTTTCAAGCTCCACAAAATTGAGATTACCAACTGCAAAACTGAATTGTCTTATGTCACCCTTAATAGCACTGGAATGTCAGATTCTATAGCAGAGGAATGGCTTTTGAAGATATCTTCCCAACTCACACACCTGGATTTATCTTACAACCAATTCCATGGAATGCTTCCATCGATCCAATTGAGATTTCCGAACGTATTTCAAATAAGGTTGGCCCATAATCAATTTGAGGGCCCACTCCCACTTTGGTCCACTAATGCCACTTACTTTGATCTCTCAAGCAATTTATTTTCCGAGCCAATTCCCTCGAATTTTGACAAGCTAATGCCCAAATTGGTAGAATTGTTTCTTTCAGAGAATGATTTGAATGGTACTCTTCCACATTCTATTTGCAACATGCAAAACCTGACAGCCCTTTCGCTAAGAAGTAATCATTTCTCTGGAGAACTCCCACACGCATGGAATTCGGGGAGCATGATAAGCATTGTAGATGCTGCCTACAACAATCTCTGTGGTAATATACCCACTTCAATGGGGCTATTAAGTTATCTTCAAATATTGAAGCTGAACAACAACAATTTTGACGGTAAGATTCTCGATTCTTTGCAAAATTTCTCTATTTTGTTGAGTATCGACGTTGGAGGCAACAAATTATCCAGGAGGTTACCTGCATGGATAGGAGGATCTGGTGGATCCATGTTGCACATGCTACAACTGCGAAACAACTCTTTTACTGGACATATTCCCCGACAATTGTGCAATCTCAGCTACCTTCACATCCTCGACCTCAGCCACAACAACTTTTCAGGTATTATTCCCAACTGTTTCAATAATTTGACTTCTCTCTTCCGTGATAGTATTGATCTTTCTTCGAATATTTTGGAAGGTGAAATCCCTCAAGAGATAGGTAGCCTCATTAATTTGAGTACCTTGAACTTGTCGAGGAATCAATTGACAGGTAAGATCCCTTCTGAGGTTGGAAATTTGCTTGGACTCGAATCTCTTGATCTTTCACACAACCATCTTTCGGGACATATTCCTCAAAGCCTTGCATCCTTAACATTTTTGTCCCATTTGAATTTGTCTTATAGCAACTTGGTGGGGAGAATTCCTTCAGGTGAAATCCCTCAAGAAATAGGTAGCCTCATTGTATTGGGTACCTTGAACTTGTCGAGGAATCAATTGACAGGTGACATCTCCTCCAACGTTGGAAATTTGTGTGTGCTCGAATCTCTTGATCTCTCGCACAACCATCTTTCAAGACATATTCCTCAGAGCCTTGCATCCTTAACATTTTTGTCCCACTTGAAT


Protein sequences

Name Description Sequence
ppa022040m disease resistance family protein / LRR family protein (best arabidopsis hit)

MKYEQSCLGVKINSPLLSLKHLIHIPKFFGELKTLTYLNISFALFTGEISPSLGNFLIESLPLSLHRVNFTSLLVLDVSYNSLNTSSFPSWLFNLTSLKKLDLSWNSFTSPFPESLGQLSKLVEPDLSSNPWEGFLTEAHFTSLTRLKHLSIRNNLIEKLVSLVFNVAYDWVPPFKLHKIEITNCKTELSYVTLNSTGMSDSIAEEWLLKISSQLTHLDLSYNQFHGMLPSIQLRFPNVFQIRLAHNQFEGPLPLWSTNATYFDLSSNLFSEPIPSNFDKLMPKLVELFLSENDLNGTLPHSICNMQNLTALSLRSNHFSGELPHAWNSGSMISIVDAAYNNLCGNIPTSMGLLSYLQILKLNNNNFDGKILDSLQNFSILLSIDVGGNKLSRRLPAWIGGSGGSMLHMLQLRNNSFTGHIPRQLCNLSYLHILDLSHNNFSGIIPNCFNNLTSLFRDSIDLSSNILEGEIPQEIGSLINLSTLNLSRNQLTGKIPSEVGNLLGLESLDLSHNHLSGHIPQSLASLTFLSHLNLSYSNLVGRIPSGEIPQEIGSLIVLGTLNLSRNQLTGDISSNVGNLCVLESLDLSHNHLSRHIPQSLASLTFLSHLN


Domains

Domain Start-End Description Sequence

superfamily: SSF52047
24-296 RNI-like,LRR

HIPKFFGELKTLTYLNISFALFTGEISPSLGNFLIESLPLSLHRVNFTSLLVLDVSYNSLNTSSFPSWLFNLTSLKKLDLSWNSFTSPFPESLGQLSKLVEPDLSSNPWEGFLTEAHFTSLTRLKHLSIRNNLIEKLVSLVFNVAYDWVPPFKLHKIEITNCKTELSYVTLNSTGMSDSIAEEWLLKISSQLTHLDLSYNQFHGMLPSIQLRFPNVFQIRLAHNQFEGPLPLWSTNATYFDLSSNLFSEPIPSNFDKLMPKLVELFLSENDLN

Gene3D: G3DSA:3.80.10.10
24-164 no description

HIPKFFGELKTLTYLNISFALFTGEISPSLGNFLIESLPLSLHRVNFTSLLVLDVSYNSLNTSSFPSWLFNLTSLKKLDLSWNSFTSPFPESLGQLSKLVEPDLSSNPWEGFLTEAHFTSLTRLKHLSIRNNLIEKLVSLV

HMMPanther: PTHR24420:SF473
35-598 SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED

LTYLNISFALFTGEISPSLGNFLIESLPLSLHRVNFTSLLVLDVSYNSLNTSSFPSWLFNLTSLKKLDLSWNSFTSPFPESLGQLSKLVEPDLSSNPWEGFLTEAHFTSLTRLKHLSIRNNLIEKLVSLVFNVAYDWVPPFKLHKIEITNCKTELSYVTLNSTGMSDSIAEEWLLKISSQLTHLDLSYNQFHGMLPSIQLRFPNVFQIRLAHNQFEGPLPLWSTNATYFDLSSNLFSEPIPSNFDKLMPKLVELFLSENDLNGTLPHSICNMQNLTALSLRSNHFSGELPHAWNSGSMISIVDAAYNNLCGNIPTSMGLLSYLQILKLNNNNFDGKILDSLQNFSILLSIDVGGNKLSRRLPAWIGGSGGSMLHMLQLRNNSFTGHIPRQLCNLSYLHILDLSHNNFSGIIPNCFNNLTSLFRDSIDLSSNILEGEIPQEIGSLINLSTLNLSRNQLTGKIPSEVGNLLGLESLDLSHNHLSGHIPQSLASLTFLSHLNLSYSNLVGRIPSGEIPQEIGSLIVLGTLNLSRNQLTGDISSNVGNLCVLESLDLSHNHLSRHIPQ

HMMPanther: PTHR24420
35-598 FAMILY NOT NAMED,FAMILY NOT NAMED

LTYLNISFALFTGEISPSLGNFLIESLPLSLHRVNFTSLLVLDVSYNSLNTSSFPSWLFNLTSLKKLDLSWNSFTSPFPESLGQLSKLVEPDLSSNPWEGFLTEAHFTSLTRLKHLSIRNNLIEKLVSLVFNVAYDWVPPFKLHKIEITNCKTELSYVTLNSTGMSDSIAEEWLLKISSQLTHLDLSYNQFHGMLPSIQLRFPNVFQIRLAHNQFEGPLPLWSTNATYFDLSSNLFSEPIPSNFDKLMPKLVELFLSENDLNGTLPHSICNMQNLTALSLRSNHFSGELPHAWNSGSMISIVDAAYNNLCGNIPTSMGLLSYLQILKLNNNNFDGKILDSLQNFSILLSIDVGGNKLSRRLPAWIGGSGGSMLHMLQLRNNSFTGHIPRQLCNLSYLHILDLSHNNFSGIIPNCFNNLTSLFRDSIDLSSNILEGEIPQEIGSLINLSTLNLSRNQLTGKIPSEVGNLLGLESLDLSHNHLSGHIPQSLASLTFLSHLNLSYSNLVGRIPSGEIPQEIGSLIVLGTLNLSRNQLTGDISSNVGNLCVLESLDLSHNHLSRHIPQ

ProfileScan: PS51450
IPR001611
72-93 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

SLLVLDVSYNSLNTSSFPSWLF

HMMSmart: SM00369
IPR003591
95-119 Leucine-rich repeats, typical (most populate
Leucine-rich repeat, typical subtype

LTSLKKLDLSWNSFTSPFPESLGQL

ProfileScan: PS51450
IPR001611
97-117 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

SLKKLDLSWNSFTSPFPESLG

HMMPfam: PF00560
IPR001611
97-119 LRR_1
Leucine-rich repeat

SLKKLDLSWNSFTSPFPESLGQL

HMMSmart: SM00369
IPR003591
144-167 Leucine-rich repeats, typical (most populate
Leucine-rich repeat, typical subtype

LTRLKHLSIRNNLIEKLVSLVFNV

ProfileScan: PS51450
IPR001611
146-167 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

RLKHLSIRNNLIEKLVSLVFNV

Gene3D: G3DSA:3.80.10.10
187-400 no description

TELSYVTLNSTGMSDSIAEEWLLKISSQLTHLDLSYNQFHGMLPSIQLRFPNVFQIRLAHNQFEGPLPLWSTNATYFDLSSNLFSEPIPSNFDKLMPKLVELFLSENDLNGTLPHSICNMQNLTALSLRSNHFSGELPHAWNSGSMISIVDAAYNNLCGNIPTSMGLLSYLQILKLNNNNFDGKILDSLQNFSILLSIDVGGNKLSRRLPAWIG

HMMPfam: PF13516
213-226 LRR_6,Leucine Rich repeat

SQLTHLDLSYNQFH

ProfileScan: PS51450
IPR001611
214-235 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

QLTHLDLSYNQFHGMLPSIQLR

HMMSmart: SM00369
IPR003591
282-306 Leucine-rich repeats, typical (most populate
Leucine-rich repeat, typical subtype

MPKLVELFLSENDLNGTLPHSICNM

ProfileScan: PS51450
IPR001611
284-306 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

KLVELFLSENDLNGTLPHSICNM

superfamily: SSF52047
298-610 RNI-like,LRR

TLPHSICNMQNLTALSLRSNHFSGELPHAWNSGSMISIVDAAYNNLCGNIPTSMGLLSYLQILKLNNNNFDGKILDSLQNFSILLSIDVGGNKLSRRLPAWIGGSGGSMLHMLQLRNNSFTGHIPRQLCNLSYLHILDLSHNNFSGIIPNCFNNLTSLFRDSIDLSSNILEGEIPQEIGSLINLSTLNLSRNQLTGKIPSEVGNLLGLESLDLSHNHLSGHIPQSLASLTFLSHLNLSYSNLVGRIPSGEIPQEIGSLIVLGTLNLSRNQLTGDISSNVGNLCVLESLDLSHNHLSRHIPQSLASLTFLSHLN

ProfileScan: PS51450
IPR001611
308-330 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

NLTALSLRSNHFSGELPHAWNSG

Gene3D: G3DSA:3.80.10.10
405-610 no description

SMLHMLQLRNNSFTGHIPRQLCNLSYLHILDLSHNNFSGIIPNCFNNLTSLFRDSIDLSSNILEGEIPQEIGSLINLSTLNLSRNQLTGKIPSEVGNLLGLESLDLSHNHLSGHIPQSLASLTFLSHLNLSYSNLVGRIPSGEIPQEIGSLIVLGTLNLSRNQLTGDISSNVGNLCVLESLDLSHNHLSRHIPQSLASLTFLSHLN

HMMPfam: PF13855
407-465 LRR_8,Leucine rich repeat

LHMLQLRNNSFTGHIPRQLCNLSYLHILDLSHNNFSGIIPNCFNNLTSLFRDSIDLSSN

HMMSmart: SM00369
IPR003591
428-451 Leucine-rich repeats, typical (most populate
Leucine-rich repeat, typical subtype

LSYLHILDLSHNNFSGIIPNCFNN

ProfileScan: PS51450
IPR001611
430-451 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

YLHILDLSHNNFSGIIPNCFNN

HMMSmart: SM00369
IPR003591
478-501 Leucine-rich repeats, typical (most populate
Leucine-rich repeat, typical subtype

LINLSTLNLSRNQLTGKIPSEVGN

ProfileScan: PS51450
IPR001611
480-502 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

NLSTLNLSRNQLTGKIPSEVGNL

HMMPfam: PF13855
480-539 LRR_8,Leucine rich repeat

NLSTLNLSRNQLTGKIPSEVGNLLGLESLDLSHNHLSGHIPQSLASLTFLSHLNLSYSNL

HMMSmart: SM00369
IPR003591
502-530 Leucine-rich repeats, typical (most populate
Leucine-rich repeat, typical subtype

LLGLESLDLSHNHLSGHIPQSLASLTFLS

ProfileScan: PS51450
IPR001611
504-527 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

GLESLDLSHNHLSGHIPQSLASLT

FPrintScan: PR00019
505-518 LEURICHRPT,Leucine-rich repeat signature

LESLDLSHNHLSGH

ProfileScan: PS51450
IPR001611
557-579 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

VLGTLNLSRNQLTGDISSNVGNL

HMMPfam: PF00560
IPR001611
560-579 LRR_1
Leucine-rich repeat

TLNLSRNQLTGDISSNVGNL

HMMSmart: SM00369
IPR003591
579-603 Leucine-rich repeats, typical (most populate
Leucine-rich repeat, typical subtype

LCVLESLDLSHNHLSRHIPQSLASL

FPrintScan: PR00019
579-592 LEURICHRPT,Leucine-rich repeat signature

LCVLESLDLSHNHL

ProfileScan: PS51450
IPR001611
581-604 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

VLESLDLSHNHLSRHIPQSLASLT

HMMPfam: PF00560
IPR001611
582-603 LRR_1
Leucine-rich repeat

LESLDLSHNHLSRHIPQSLASL






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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