PRGDB00172501 (ppa021401m)

ppa021401m
Gene Type	Putative_R-Genes,_predicted_from_Pythozome
GenBank
Gene Class	N
Domain Type	NBS
Gene Species	Prunus persica
	Comment?

ABC-2 type transporter family protein (best arabidopsis hit)

DNA Sequence

AAAGGTTCCATATTAAGTAGGGCCTCTAGCAATGGGTTGGGCTATTCTTTCTCACTTGCTGCAGAAGACAATACTTCAACAGCTAAGTCTACTTCAACTGAAGAAGGAGGTCCAGATGCAGACAAAGGGAGAAAATTACATGTGGACTCTACCTTACCAATTTATCTTAAGTTCGAAGATGTAAAGTATAAGGTAGCTGCAAAGAGTGTGAAAAGCTCAAATGCAGAGTACATTCTGCATGGAATCTCTGGTTCAGTGCTTCCAGGAGAGGTTCTTGCTCTAATGGGACCTTCAGGAGGCGGCAAAACAACTTTGCTCAATCTCCTCAGTGGAAGAGTCAAACTCAACAGCGGCACCATCACTTACAATGACCAACCATACGCCAAGTCCCTCAAACGGAGGATTGGATATGTAATGCAAGATGATCTTTTGTTCCCCCATCTTACAGTCAAAGAGACTCTAACTTATGCTGCCTTACTCCGTCTTCCCATTACCTTAACCAGAAACCAGAAAGAAGAAAGGGCCATGGATGTAATTAATGAGCTAGGCTTGGAAAGGTGCCAAGACACACTAATTGGTGGCACATTTGTTAGAGGAGTTTCTGGTGGTGAAAGAAAAAGAGTGTGCATTGGCAATGAAATCCTGCTCAACCCATCACTTCTGTTTTTAGATGAACCAACATCTGGTCTTGATTCGACAGCGGCACTTCGAACACTTCAGATGCTTCACATTATTGCAAAGGCTGGAAAAACAGTGGTGACTACAATACATCAACCGTCTAGCAGGATCTTTAACAAGTTTGATAAGCTTATTCTCTTGGGTAGAGGAAGCTCCTTATACTTCGGAAAAGCCTCTGAAGCAATGATGTACTTCTCCTCAATTGGCTGTGCACCCCTTATAGCTATGAACCCGGCAGAGTTTCTCATTGATCTGGCAAACGGTAACACAAATGAAAAATCACTTCCAACAGAATTGGAGGATAGAGGGCCTTCCGCAGTTGACATCCACGAGTTTCTAGTTGAAGCCAATCAAATCAGACTTGGAAAAATGGAGAAGGCAAAGCTCCTAAGCTCTGTGCTGACAGAGGGTGAGAGTAAGATGCAGAGGATGTCATATTCAAGGGAATCAAAAGCAACTTGGTGCGAACAGTTTTTGATTCTTTGCAGGAGGGGCCTTAAGGAGAGACGCCACGAATACTTAAGCTGTCTGCGTGTAGTTCAAGTTATCTCCACTGCTATAATCATAGGACTTCTATGGTGGCAATCTGATGCTTCATCCCCAAGGCGAGTTCAAGATCAGGCAGGGCTGTTGTTCTTCATTTCAGTATTTTGGGCTTTCTTTCCTATGTTTACTGCAGTTTTCACATTTCCACAAGAAAGAGCAATAGTAGCTAAAGAGAGATCAGTGGAGATGTACAAACTCAGTGCCTACTTTTTAGCTAGAAACATCAGTGATCTTCCTCTTGATCTCCTGCTCCCAATAGTGTTCCTCGTGATAGTGTACTTGATGGCAGGCTTGAAGCTCAGATTTTCTTCATTTTTTCAAACAATGCTTACAATTTTCCTCAGCATTGTGGCCTCTCAGGGTCTAGGATTGAGCATAGGTGCAGCATTTATCGACGTGAAAAAGGCAACAACGCTAGCTTCCATCATTGTTATGACATTCATGTTATCTGGTGGATTCTTTATCCAGAAAGTTCCATCAATGGTTTCGTGGATACGCTATATCTCCTTCAACTACCACACATACAGGCTACTCCTGAAAATTCAGTTTGCTTGTCAGTCTCCCTTCATCAATGAATTAAGACTTGATTCAGGTGTGATGGAAGTGGGAGCTATGATGGTGATGATCATTGGGTACCGATTACTGGCCTATTTATTACTCAGGACAATGAAGTTCAAGACAATGATGTAG

Protein sequences

Name	Description	Sequence
ppa021401m	ABC-2 type transporter family protein (best arabidopsis hit)	KGSILSRASSNGLGYSFSLAAEDNTSTAKSTSTEEGGPDADKGRKLHVDSTLPIYLKFEDVKYKVAAKSVKSSNAEYILHGISGSVLPGEVLALMGPSGGGKTTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTAALRTLQMLHIIAKAGKTVVTTIHQPSSRIFNKFDKLILLGRGSSLYFGKASEAMMYFSSIGCAPLIAMNPAEFLIDLANGNTNEKSLPTELEDRGPSAVDIHEFLVEANQIRLGKMEKAKLLSSVLTEGESKMQRMSYSRESKATWCEQFLILCRRGLKERRHEYLSCLRVVQVISTAIIIGLLWWQSDASSPRRVQDQAGLLFFISVFWAFFPMFTAVFTFPQERAIVAKERSVEMYKLSAYFLARNISDLPLDLLLPIVFLVIVYLMAGLKLRFSSFFQTMLTIFLSIVASQGLGLSIGAAFIDVKKATTLASIIVMTFMLSGGFFIQKVPSMVSWIRYISFNYHTYRLLLKIQFACQSPFINELRLDSGVMEVGAMMVMIIGYRLLAYLLLRTMKFKTMM*

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52540	35-286	P-loop containing nucleoside triphosphate hydrolases	EGGPDADKGRKLHVDSTLPIYLKFEDVKYKVAAKSVKSSNAEYILHGISGSVLPGEVLALMGPSGGGKTTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTAALRTLQMLHIIAKAGKTVVTTIHQPSSRIFNKFDKLILLGRGSSLYFGKASE
HMMPanther: PTHR19241	49-632	FAMILY NOT NAMED,ATP-BINDING CASSETTE TRANSPORTER	DSTLPIYLKFEDVKYKVAAKSVKSSNAEYILHGISGSVLPGEVLALMGPSGGGKTTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTAALRTLQMLHIIAKAGKTVVTTIHQPSSRIFNKFDKLILLGRGSSLYFGKASEAMMYFSSIGCAPLIAMNPAEFLIDLANGNTNEKSLPTELEDRGPSAVDIHEFLVEANQIRLGKMEKAKLLSSVLTEGESKMQRMSYSRESKATWCEQFLILCRRGLKERRHEYLSCLRVVQVISTAIIIGLLWWQSDASSPRRVQDQAGLLFFISVFWAFFPMFTAVFTFPQERAIVAKERSVEMYKLSAYFLARNISDLPLDLLLPIVFLVIVYLMAGLKLRFSSFFQTMLTIFLSIVASQGLGLSIGAAFIDVKKATTLASIIVMTFMLSGGFFIQKVPSMVSWIRYISFNYHTYRLLLKIQFACQSPFINELRLDSGVMEVGAMMVMIIGYRLLAYLLLRTMK
HMMPanther: PTHR19241:SF23	49-632	ATP-BINDING CASSETTE TRANSPORTER,ATP-BINDING CASSETTE TRANSPORTER	DSTLPIYLKFEDVKYKVAAKSVKSSNAEYILHGISGSVLPGEVLALMGPSGGGKTTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTAALRTLQMLHIIAKAGKTVVTTIHQPSSRIFNKFDKLILLGRGSSLYFGKASEAMMYFSSIGCAPLIAMNPAEFLIDLANGNTNEKSLPTELEDRGPSAVDIHEFLVEANQIRLGKMEKAKLLSSVLTEGESKMQRMSYSRESKATWCEQFLILCRRGLKERRHEYLSCLRVVQVISTAIIIGLLWWQSDASSPRRVQDQAGLLFFISVFWAFFPMFTAVFTFPQERAIVAKERSVEMYKLSAYFLARNISDLPLDLLLPIVFLVIVYLMAGLKLRFSSFFQTMLTIFLSIVASQGLGLSIGAAFIDVKKATTLASIIVMTFMLSGGFFIQKVPSMVSWIRYISFNYHTYRLLLKIQFACQSPFINELRLDSGVMEVGAMMVMIIGYRLLAYLLLRTMK
ProfileScan: PS50893 IPR003439	56-300	ABC_TRANSPORTER_2 ABC transporter-like	LKFEDVKYKVAAKSVKSSNAEYILHGISGSVLPGEVLALMGPSGGGKTTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTAALRTLQMLHIIAKAGKTVVTTIHQPSSRIFNKFDKLILLGRGSSLYFGKASEAMMYFSSIGCAPLI
Gene3D: G3DSA:3.40.50.300	56-288	no description	LKFEDVKYKVAAKSVKSSNAEYILHGISGSVLPGEVLALMGPSGGGKTTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTAALRTLQMLHIIAKAGKTVVTTIHQPSSRIFNKFDKLILLGRGSSLYFGKASEAM
Seg: seg	61-75	seg	VKYKVAAKSVKSSNA
HMMSmart: SM00382 IPR003593	88-277	ATPases associated with a variety of cellula,NBS AAA+ ATPase domain	PGEVLALMGPSGGGKTTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTAALRTLQMLHIIAKAGKTVVTTIHQPSSRIFNKFDKLILLGRGS
HMMPfam: PF00005 IPR003439	103-228	ABC_tran ABC transporter-like	TTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTS
PatternScan: PS00211 IPR017871	200-214	ABC_TRANSPORTER_1 ABC transporter, conserved site	VSGGERKRVCIGNEI
HMMPfam: PF01061 IPR013525	382-591	ABC2_membrane ABC-2 type transporter	EQFLILCRRGLKERRHEYLSCLRVVQVISTAIIIGLLWWQSDASSPRRVQDQAGLLFFISVFWAFFPMFTAVFTFPQERAIVAKERSVEMYKLSAYFLARNISDLPLDLLLPIVFLVIVYLMAGLKLRFSSFFQTMLTIFLSIVASQGLGLSIGAAFIDVKKATTLASIIVMTFMLSGGFFIQKVPSMVSWIRYISFNYHTYRLLLKIQF
Seg: seg	485-502	seg	DLPLDLLLPIVFLVIVYL

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Analyses

Blast

Blast matches against Reference R-Genes. Show