PRGDB00172501 (ppa021401m)
ppa021401m | |
---|---|
Gene Type | Putative_R-Genes,_predicted_from_Pythozome |
GenBank | |
Gene Class | N |
Domain Type | NBS |
Gene Species | Prunus persica |
DNA Sequence
AAAGGTTCCATATTAAGTAGGGCCTCTAGCAATGGGTTGGGCTATTCTTTCTCACTTGCTGCAGAAGACAATACTTCAACAGCTAAGTCTACTTCAACTGAAGAAGGAGGTCCAGATGCAGACAAAGGGAGAAAATTACATGTGGACTCTACCTTACCAATTTATCTTAAGTTCGAAGATGTAAAGTATAAGGTAGCTGCAAAGAGTGTGAAAAGCTCAAATGCAGAGTACATTCTGCATGGAATCTCTGGTTCAGTGCTTCCAGGAGAGGTTCTTGCTCTAATGGGACCTTCAGGAGGCGGCAAAACAACTTTGCTCAATCTCCTCAGTGGAAGAGTCAAACTCAACAGCGGCACCATCACTTACAATGACCAACCATACGCCAAGTCCCTCAAACGGAGGATTGGATATGTAATGCAAGATGATCTTTTGTTCCCCCATCTTACAGTCAAAGAGACTCTAACTTATGCTGCCTTACTCCGTCTTCCCATTACCTTAACCAGAAACCAGAAAGAAGAAAGGGCCATGGATGTAATTAATGAGCTAGGCTTGGAAAGGTGCCAAGACACACTAATTGGTGGCACATTTGTTAGAGGAGTTTCTGGTGGTGAAAGAAAAAGAGTGTGCATTGGCAATGAAATCCTGCTCAACCCATCACTTCTGTTTTTAGATGAACCAACATCTGGTCTTGATTCGACAGCGGCACTTCGAACACTTCAGATGCTTCACATTATTGCAAAGGCTGGAAAAACAGTGGTGACTACAATACATCAACCGTCTAGCAGGATCTTTAACAAGTTTGATAAGCTTATTCTCTTGGGTAGAGGAAGCTCCTTATACTTCGGAAAAGCCTCTGAAGCAATGATGTACTTCTCCTCAATTGGCTGTGCACCCCTTATAGCTATGAACCCGGCAGAGTTTCTCATTGATCTGGCAAACGGTAACACAAATGAAAAATCACTTCCAACAGAATTGGAGGATAGAGGGCCTTCCGCAGTTGACATCCACGAGTTTCTAGTTGAAGCCAATCAAATCAGACTTGGAAAAATGGAGAAGGCAAAGCTCCTAAGCTCTGTGCTGACAGAGGGTGAGAGTAAGATGCAGAGGATGTCATATTCAAGGGAATCAAAAGCAACTTGGTGCGAACAGTTTTTGATTCTTTGCAGGAGGGGCCTTAAGGAGAGACGCCACGAATACTTAAGCTGTCTGCGTGTAGTTCAAGTTATCTCCACTGCTATAATCATAGGACTTCTATGGTGGCAATCTGATGCTTCATCCCCAAGGCGAGTTCAAGATCAGGCAGGGCTGTTGTTCTTCATTTCAGTATTTTGGGCTTTCTTTCCTATGTTTACTGCAGTTTTCACATTTCCACAAGAAAGAGCAATAGTAGCTAAAGAGAGATCAGTGGAGATGTACAAACTCAGTGCCTACTTTTTAGCTAGAAACATCAGTGATCTTCCTCTTGATCTCCTGCTCCCAATAGTGTTCCTCGTGATAGTGTACTTGATGGCAGGCTTGAAGCTCAGATTTTCTTCATTTTTTCAAACAATGCTTACAATTTTCCTCAGCATTGTGGCCTCTCAGGGTCTAGGATTGAGCATAGGTGCAGCATTTATCGACGTGAAAAAGGCAACAACGCTAGCTTCCATCATTGTTATGACATTCATGTTATCTGGTGGATTCTTTATCCAGAAAGTTCCATCAATGGTTTCGTGGATACGCTATATCTCCTTCAACTACCACACATACAGGCTACTCCTGAAAATTCAGTTTGCTTGTCAGTCTCCCTTCATCAATGAATTAAGACTTGATTCAGGTGTGATGGAAGTGGGAGCTATGATGGTGATGATCATTGGGTACCGATTACTGGCCTATTTATTACTCAGGACAATGAAGTTCAAGACAATGATGTAG
Protein sequences
Name | Description | Sequence |
---|---|---|
ppa021401m | ABC-2 type transporter family protein (best arabidopsis hit) | KGSILSRASSNGLGYSFSLAAEDNTSTAKSTSTEEGGPDADKGRKLHVDSTLPIYLKFEDVKYKVAAKSVKSSNAEYILHGISGSVLPGEVLALMGPSGGGKTTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTAALRTLQMLHIIAKAGKTVVTTIHQPSSRIFNKFDKLILLGRGSSLYFGKASEAMMYFSSIGCAPLIAMNPAEFLIDLANGNTNEKSLPTELEDRGPSAVDIHEFLVEANQIRLGKMEKAKLLSSVLTEGESKMQRMSYSRESKATWCEQFLILCRRGLKERRHEYLSCLRVVQVISTAIIIGLLWWQSDASSPRRVQDQAGLLFFISVFWAFFPMFTAVFTFPQERAIVAKERSVEMYKLSAYFLARNISDLPLDLLLPIVFLVIVYLMAGLKLRFSSFFQTMLTIFLSIVASQGLGLSIGAAFIDVKKATTLASIIVMTFMLSGGFFIQKVPSMVSWIRYISFNYHTYRLLLKIQFACQSPFINELRLDSGVMEVGAMMVMIIGYRLLAYLLLRTMKFKTMM* |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
superfamily: SSF52540 | 35-286 | P-loop containing nucleoside triphosphate hydrolases | EGGPDADKGRKLHVDSTLPIYLKFEDVKYKVAAKSVKSSNAEYILHGISGSVLPGEVLALMGPSGGGKTTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTAALRTLQMLHIIAKAGKTVVTTIHQPSSRIFNKFDKLILLGRGSSLYFGKASE |
HMMPanther: PTHR19241 | 49-632 | FAMILY NOT NAMED,ATP-BINDING CASSETTE TRANSPORTER | DSTLPIYLKFEDVKYKVAAKSVKSSNAEYILHGISGSVLPGEVLALMGPSGGGKTTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTAALRTLQMLHIIAKAGKTVVTTIHQPSSRIFNKFDKLILLGRGSSLYFGKASEAMMYFSSIGCAPLIAMNPAEFLIDLANGNTNEKSLPTELEDRGPSAVDIHEFLVEANQIRLGKMEKAKLLSSVLTEGESKMQRMSYSRESKATWCEQFLILCRRGLKERRHEYLSCLRVVQVISTAIIIGLLWWQSDASSPRRVQDQAGLLFFISVFWAFFPMFTAVFTFPQERAIVAKERSVEMYKLSAYFLARNISDLPLDLLLPIVFLVIVYLMAGLKLRFSSFFQTMLTIFLSIVASQGLGLSIGAAFIDVKKATTLASIIVMTFMLSGGFFIQKVPSMVSWIRYISFNYHTYRLLLKIQFACQSPFINELRLDSGVMEVGAMMVMIIGYRLLAYLLLRTMK |
HMMPanther: PTHR19241:SF23 | 49-632 | ATP-BINDING CASSETTE TRANSPORTER,ATP-BINDING CASSETTE TRANSPORTER | DSTLPIYLKFEDVKYKVAAKSVKSSNAEYILHGISGSVLPGEVLALMGPSGGGKTTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTAALRTLQMLHIIAKAGKTVVTTIHQPSSRIFNKFDKLILLGRGSSLYFGKASEAMMYFSSIGCAPLIAMNPAEFLIDLANGNTNEKSLPTELEDRGPSAVDIHEFLVEANQIRLGKMEKAKLLSSVLTEGESKMQRMSYSRESKATWCEQFLILCRRGLKERRHEYLSCLRVVQVISTAIIIGLLWWQSDASSPRRVQDQAGLLFFISVFWAFFPMFTAVFTFPQERAIVAKERSVEMYKLSAYFLARNISDLPLDLLLPIVFLVIVYLMAGLKLRFSSFFQTMLTIFLSIVASQGLGLSIGAAFIDVKKATTLASIIVMTFMLSGGFFIQKVPSMVSWIRYISFNYHTYRLLLKIQFACQSPFINELRLDSGVMEVGAMMVMIIGYRLLAYLLLRTMK |
ProfileScan: PS50893 IPR003439
|
56-300 | ABC_TRANSPORTER_2 ABC transporter-like
|
LKFEDVKYKVAAKSVKSSNAEYILHGISGSVLPGEVLALMGPSGGGKTTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTAALRTLQMLHIIAKAGKTVVTTIHQPSSRIFNKFDKLILLGRGSSLYFGKASEAMMYFSSIGCAPLI |
Gene3D: G3DSA:3.40.50.300 | 56-288 | no description | LKFEDVKYKVAAKSVKSSNAEYILHGISGSVLPGEVLALMGPSGGGKTTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTAALRTLQMLHIIAKAGKTVVTTIHQPSSRIFNKFDKLILLGRGSSLYFGKASEAM |
Seg: seg | 61-75 | seg | VKYKVAAKSVKSSNA |
HMMSmart: SM00382 IPR003593
|
88-277 | ATPases associated with a variety of cellula,NBS AAA+ ATPase domain
|
PGEVLALMGPSGGGKTTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTAALRTLQMLHIIAKAGKTVVTTIHQPSSRIFNKFDKLILLGRGS |
HMMPfam: PF00005 IPR003439
|
103-228 | ABC_tran ABC transporter-like
|
TTLLNLLSGRVKLNSGTITYNDQPYAKSLKRRIGYVMQDDLLFPHLTVKETLTYAALLRLPITLTRNQKEERAMDVINELGLERCQDTLIGGTFVRGVSGGERKRVCIGNEILLNPSLLFLDEPTS |
PatternScan: PS00211 IPR017871
|
200-214 | ABC_TRANSPORTER_1 ABC transporter, conserved site
|
VSGGERKRVCIGNEI |
HMMPfam: PF01061 IPR013525
|
382-591 | ABC2_membrane ABC-2 type transporter
|
EQFLILCRRGLKERRHEYLSCLRVVQVISTAIIIGLLWWQSDASSPRRVQDQAGLLFFISVFWAFFPMFTAVFTFPQERAIVAKERSVEMYKLSAYFLARNISDLPLDLLLPIVFLVIVYLMAGLKLRFSSFFQTMLTIFLSIVASQGLGLSIGAAFIDVKKATTLASIIVMTFMLSGGFFIQKVPSMVSWIRYISFNYHTYRLLLKIQF |
Seg: seg | 485-502 | seg | DLPLDLLLPIVFLVIVYL |
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