PRGDB00172607 (ppa014861m)

From PRG Wiki
Jump to: navigation, search
ppa014861m
Gene Type Putative_R-Genes,_predicted_from_Pythozome
GenBank
Gene Class N
Domain Type NBS
Gene Species Prunus persica

Comment?

ABC-2 type transporter family protein (best arabidopsis hit)

DNA Sequence

ATGGAGCAAGAAATGGTGGATTTAGAGATTCAAAGTCAAACTAATACAACATCCGACACTGTTGAAGCCCCAGCTATCTTCAAGAAAGCCATTCGACCCGTCACATTGAAGTTTGAGGACGTGGTTTACAAGATCAAACCCAAGAAGAGTATCAAGAACGAAGAGAGAGTGATCTTAAACGGTGTCTCGGGCCTTGTTCAACCCGGGGAGATCCTCGCCATGCTAGGCCCCTCCGGGAGCGGCAAAACGACTCTCCTAACGGCACTTGGAGGCCGGCTAGGCGGTCGACTGGGCGGAGCCATAACCTACAACAATAAACTATTCTCAAACGCAATGAAAAGAAACATCGGCTTTGTAACCCAAGACGACTTTCTCTACCCCCATTTGACGGTCACCGAAACCCTAGTCTACACGGCCCTTCTTCGCTTGCCCAACACCCTATCCAAAGCCGAGAAGACCATGCAAGCCGAGGCTGTGATTATACAACTGGAGTTAACCAAGTGCAAGAACAGTGTTGTTGGGGATGAGTTCTTGAGGGGTGTTTCAGGTGGGGAGAGAAGAAGGGTTAGCATAGGCCAAGAATTACTCGTAAACCCTAGCTTGCTCTTCTTGGATGAGCCCACATCCGGGCTCGATTCGACCACGGCGCAGCGGATTGTTTCGGCATTGTGGGATTTGGCTAGTGGAGGAAGAACTATTGTGATGACAATCCATCAACCTTCAAGTAGGCTTTTCTACATGTTTCATAAGGTGATGTTGTTATCGGAAGGGAATTGTTTGTATTTCGGAAAAGTATCGGAGGTCATGGACTATTTTTCGGGCATTGGCTATGTCCCATTGGTAGCTATGAATCCTGCGGATTTTCTGTTGGACCTTGCCAATGGTCTGGCGCCTGATGGATCGCATGAAAACAAGAGCAAGGTGAAGCAGAGCCTGGCCTTGGCCTACAAGCACAACCGTTTAGATAATCTGAAAGCTGAGATTCAAGAAACCAACTCCAGCCATTTTCAAGATGGATCAGAAAACAAGAGCTTCGGGAAATGGCCCACAACTTGGTGGCAGCAATTCTCTGTGTTGCTTAGGAGAGGATTGAAAGAGAGAAGGCATGAGTCCTTCTCCGGTCTCAAGATTGGTCAGGTTGTGGCGGTGGCTCTTCTTTCTGGGCTACTATGGTGGCAGTCAGATGTTTCCCACTTGCAGGATCAGACTGGGCTTCTCTTCTTTATGTCTGGATTCTGGGGTTTTTTCCCTCTGTTCCAAGCAATCTTCACCTTCCCCCAAGAGCGCAAGATGCTTGAAAAGGAGAGATCTTCAGGAACATACAGACTCTCCTCCTACTTCATATCAAGAATTGTTGCTGATCTTCCCATGGAGCTTGTCCTTCCAGCCGTATTTGTGACCATAACATATTGGATGGCAGGGCTGAAACCAACAGCAGGACACTTCTTCCACACCTTGCTTGTTCTGCTACTCAGTGTGTTAGTAGCTCAAGGCATGGGGCTTGCTCTTGGGGCTCTGGTAATGGACCAAAAAAAGGCCACTGTTCTTGCATCAGTCCTCATGCTGTCATTTCTTCTAGCTGGAGGTTACTATGTTCAACATGTCCCTGCTTTCATTGGTTGGATCAAATACATCTCCATCAGCAACTACTCATACAAGCTCTTGCTGGGATCTCTGTACAGTAAATCTGACACTTACCCATGTGATAGTGGGGTTTGCTTGGTTAGAGAATTCCCAAATATAAAACATGTTGGGCTTGATGGCCAAATAAGTGGTGCAGTTGCTTTGGCCACAATGCTTGTGGGCTATAGGCTAATTGGGTATTTGGCTCTCATGAGGATTGGAGTCACAAAGAAAAAGTATGCTTAG


Protein sequences

Name Description Sequence
ppa014861m ABC-2 type transporter family protein (best arabidopsis hit)

MEQEMVDLEIQSQTNTTSDTVEAPAIFKKAIRPVTLKFEDVVYKIKPKKSIKNEERVILNGVSGLVQPGEILAMLGPSGSGKTTLLTALGGRLGGRLGGAITYNNKLFSNAMKRNIGFVTQDDFLYPHLTVTETLVYTALLRLPNTLSKAEKTMQAEAVIIQLELTKCKNSVVGDEFLRGVSGGERRRVSIGQELLVNPSLLFLDEPTSGLDSTTAQRIVSALWDLASGGRTIVMTIHQPSSRLFYMFHKVMLLSEGNCLYFGKVSEVMDYFSGIGYVPLVAMNPADFLLDLANGLAPDGSHENKSKVKQSLALAYKHNRLDNLKAEIQETNSSHFQDGSENKSFGKWPTTWWQQFSVLLRRGLKERRHESFSGLKIGQVVAVALLSGLLWWQSDVSHLQDQTGLLFFMSGFWGFFPLFQAIFTFPQERKMLEKERSSGTYRLSSYFISRIVADLPMELVLPAVFVTITYWMAGLKPTAGHFFHTLLVLLLSVLVAQGMGLALGALVMDQKKATVLASVLMLSFLLAGGYYVQHVPAFIGWIKYISISNYSYKLLLGSLYSKSDTYPCDSGVCLVREFPNIKHVGLDGQISGAVALATMLVGYRLIGYLALMRIGVTKKKYA*

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR19241
2-618 FAMILY NOT NAMED,ATP-BINDING CASSETTE TRANSPORTER

EQEMVDLEIQSQTNTTSDTVEAPAIFKKAIRPVTLKFEDVVYKIKPKKSIKNEERVILNGVSGLVQPGEILAMLGPSGSGKTTLLTALGGRLGGRLGGAITYNNKLFSNAMKRNIGFVTQDDFLYPHLTVTETLVYTALLRLPNTLSKAEKTMQAEAVIIQLELTKCKNSVVGDEFLRGVSGGERRRVSIGQELLVNPSLLFLDEPTSGLDSTTAQRIVSALWDLASGGRTIVMTIHQPSSRLFYMFHKVMLLSEGNCLYFGKVSEVMDYFSGIGYVPLVAMNPADFLLDLANGLAPDGSHENKSKVKQSLALAYKHNRLDNLKAEIQETNSSHFQDGSENKSFGKWPTTWWQQFSVLLRRGLKERRHESFSGLKIGQVVAVALLSGLLWWQSDVSHLQDQTGLLFFMSGFWGFFPLFQAIFTFPQERKMLEKERSSGTYRLSSYFISRIVADLPMELVLPAVFVTITYWMAGLKPTAGHFFHTLLVLLLSVLVAQGMGLALGALVMDQKKATVLASVLMLSFLLAGGYYVQHVPAFIGWIKYISISNYSYKLLLGSLYSKSDTYPCDSGVCLVREFPNIKHVGLDGQISGAVALATMLVGYRLIGYLALMRIGVTK

HMMPanther: PTHR19241:SF23
2-618 ATP-BINDING CASSETTE TRANSPORTER,ATP-BINDING CASSETTE TRANSPORTER

EQEMVDLEIQSQTNTTSDTVEAPAIFKKAIRPVTLKFEDVVYKIKPKKSIKNEERVILNGVSGLVQPGEILAMLGPSGSGKTTLLTALGGRLGGRLGGAITYNNKLFSNAMKRNIGFVTQDDFLYPHLTVTETLVYTALLRLPNTLSKAEKTMQAEAVIIQLELTKCKNSVVGDEFLRGVSGGERRRVSIGQELLVNPSLLFLDEPTSGLDSTTAQRIVSALWDLASGGRTIVMTIHQPSSRLFYMFHKVMLLSEGNCLYFGKVSEVMDYFSGIGYVPLVAMNPADFLLDLANGLAPDGSHENKSKVKQSLALAYKHNRLDNLKAEIQETNSSHFQDGSENKSFGKWPTTWWQQFSVLLRRGLKERRHESFSGLKIGQVVAVALLSGLLWWQSDVSHLQDQTGLLFFMSGFWGFFPLFQAIFTFPQERKMLEKERSSGTYRLSSYFISRIVADLPMELVLPAVFVTITYWMAGLKPTAGHFFHTLLVLLLSVLVAQGMGLALGALVMDQKKATVLASVLMLSFLLAGGYYVQHVPAFIGWIKYISISNYSYKLLLGSLYSKSDTYPCDSGVCLVREFPNIKHVGLDGQISGAVALATMLVGYRLIGYLALMRIGVTK

Gene3D: G3DSA:3.40.50.300
35-271 no description

TLKFEDVVYKIKPKKSIKNEERVILNGVSGLVQPGEILAMLGPSGSGKTTLLTALGGRLGGRLGGAITYNNKLFSNAMKRNIGFVTQDDFLYPHLTVTETLVYTALLRLPNTLSKAEKTMQAEAVIIQLELTKCKNSVVGDEFLRGVSGGERRRVSIGQELLVNPSLLFLDEPTSGLDSTTAQRIVSALWDLASGGRTIVMTIHQPSSRLFYMFHKVMLLSEGNCLYFGKVSEVMDY

superfamily: SSF52540
36-267 P-loop containing nucleoside triphosphate hydrolases

LKFEDVVYKIKPKKSIKNEERVILNGVSGLVQPGEILAMLGPSGSGKTTLLTALGGRLGGRLGGAITYNNKLFSNAMKRNIGFVTQDDFLYPHLTVTETLVYTALLRLPNTLSKAEKTMQAEAVIIQLELTKCKNSVVGDEFLRGVSGGERRRVSIGQELLVNPSLLFLDEPTSGLDSTTAQRIVSALWDLASGGRTIVMTIHQPSSRLFYMFHKVMLLSEGNCLYFGKVSE

ProfileScan: PS50893
IPR003439
36-281 ABC_TRANSPORTER_2
ABC transporter-like

LKFEDVVYKIKPKKSIKNEERVILNGVSGLVQPGEILAMLGPSGSGKTTLLTALGGRLGGRLGGAITYNNKLFSNAMKRNIGFVTQDDFLYPHLTVTETLVYTALLRLPNTLSKAEKTMQAEAVIIQLELTKCKNSVVGDEFLRGVSGGERRRVSIGQELLVNPSLLFLDEPTSGLDSTTAQRIVSALWDLASGGRTIVMTIHQPSSRLFYMFHKVMLLSEGNCLYFGKVSEVMDYFSGIGYVPLV

HMMSmart: SM00382
IPR003593
68-256 ATPases associated with a variety of cellula,NBS
AAA+ ATPase domain

PGEILAMLGPSGSGKTTLLTALGGRLGGRLGGAITYNNKLFSNAMKRNIGFVTQDDFLYPHLTVTETLVYTALLRLPNTLSKAEKTMQAEAVIIQLELTKCKNSVVGDEFLRGVSGGERRRVSIGQELLVNPSLLFLDEPTSGLDSTTAQRIVSALWDLASGGRTIVMTIHQPSSRLFYMFHKVMLLSE

Seg: seg
78-100 seg

SGSGKTTLLTALGGRLGGRLGGA

HMMPfam: PF00005
IPR003439
83-209 ABC_tran
ABC transporter-like

TTLLTALGGRLGGRLGGAITYNNKLFSNAMKRNIGFVTQDDFLYPHLTVTETLVYTALLRLPNTLSKAEKTMQAEAVIIQLELTKCKNSVVGDEFLRGVSGGERRRVSIGQELLVNPSLLFLDEPTS

Seg: seg
179-192 seg

RGVSGGERRRVSIG

PatternScan: PS00211
IPR017871
181-195 ABC_TRANSPORTER_1
ABC transporter, conserved site

VSGGERRRVSIGQEL

HMMPfam: PF01061
IPR013525
354-559 ABC2_membrane
ABC-2 type transporter

QQFSVLLRRGLKERRHESFSGLKIGQVVAVALLSGLLWWQSDVSHLQDQTGLLFFMSGFWGFFPLFQAIFTFPQERKMLEKERSSGTYRLSSYFISRIVADLPMELVLPAVFVTITYWMAGLKPTAGHFFHTLLVLLLSVLVAQGMGLALGALVMDQKKATVLASVLMLSFLLAGGYYVQHVPAFIGWIKYISISNYSYKLLLGSL

Seg: seg
486-495 seg

LLVLLLSVLV

Seg: seg
550-563 seg

YSYKLLLGSLYSKS






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox