PRGDB00172608 (ppa001882m)

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ppa001882m
Gene Type Putative_R-Genes,_predicted_from_Pythozome
GenBank
Gene Class N
Domain Type NBS
Gene Species Prunus persica

Comment?

ABC-2 type transporter family protein (best arabidopsis hit)

DNA Sequence

ATGGAGAAATTACCAAGCTCATCCGTGCTGCCAAGGACCAAGTCCGATCAACTAGCGGAAACTGTGGCGGCCGCGTTCAAGTCACCTCCACTAGGCGAAGCCATTGTGGGGTCAGCAGACGGCAGCAGCACCCTATCGAGGAAGTCTAGCCGGCGCATGATGGGGGCGTCACCCGGGCGTGGTAGCGGCAGTGTTGGCAAAAACACACACATTAGGAAGTCTAGGAGCGCCCAAATGAAGCTGGACCTGGATGAGGTCAGCAGTGGCGCTGCTCTAAGCCGAGCCTCCAGCGCCAGCTTGGGGTTCTCATTCTCCTTCACTGGCTTCACTGTGCCCCCGGATAACATCGCCGACTCAAAGCCTTTTAGCGACGACGATGATATCCAAGATCTTGAAGCTGGCACCACCAGGAAGCCGAAATTCCAAACAGAACCTACTCTGCCAATTTATCTCAAGTTCACAGATGTGACATACAAGATCATTCTCAAAGGAATGAGGACAAGTGAAGAGAAGGATATCTTGAATGGGATTACCGGTTCGGTGCACCCGGGAGAAGTTTTGGCCCTTATGGGACCATCTGGAAGTGGAAAGACCAGCCTCCTTAATCTGCTTGGAGGCAGGGCAGTTCAAGCCAATGTCACTGGTTCCATTACTTACAATGACCAGACATACTCCAAGTTCCTAAAAAGCAGGATAGGGTTCGTTACACAGGACGATGTTCTATTTCCTCACCTTACAGTGAAAGAGACATTAACATATGCAGCCCTCCTTCGGCTGTCAAAGACATTGACAAAAGAGCAGAAGGAAAAACGAGCTCTAGATGTCATTTATGAGCTAGGCTTAGAAAGGTGCCAAGACACTATGATTGGTGGCTCCTTTGTCCGCGGGGTATCAGGTGGAGAGAGGAAGAGAGTTTGCATTGGCAATGAGATCATAATTAACCCTTCCCTTCTGTTTCTGGATGAACCAACCTCTGGCTTGGATTCTACGACTGCACTGAGAATCGTTCAGATGTTACAAGACATAGCAGAGGCTGGCAAAACAGTGGTGACAACAATCCACCAGCCATCAAGTAGACTCTTCCACAAATTTGACAAGTTGATCCTTCTTGGGAAGGGAAGCTTGCTTTACTTTGGGAAAGCATCAGAAGCAATGGTTTATTTCTCATCCATAGGATGTTCCCCACTTATTGCCATGAACCCGGCAGAGTTCTTGCTAGACCTTGCAAACGGAAACATAAATGACGTTTCTATACCATCAGAGTTAGAGGATAAAGTGCAAATGGGAAATTCAGAAGCAGCTGATACAAGAAATGGAAAGCCATCTCCAGCAGTTGTGCATGATTATCTTGTGGAGGCCTACGAGACACGAGTTGCAGACGAGGAGAAGAAGAAGATTATGGTTCCTCTTCCCCTTGACGATGAACTGAAGTTGAAGGTGTCGATTTCAAAACGAGAATGGGGAGGAAGCTGGTGGGAACAATTTTCCATCTTGTTTTGTAGAGGAATTAAAGAACGAAGGCACGACTACTTCAGCTGGTTGAGAATTACCCAAGTCCTCTCCACTGCAGTTATTCTGGGCTTGCTCTGGTGGCAGTCAGATAGCAACAATCCCAAAGGCCTGGAGGATCAGGCAGGATTGCTTTTCTTCATTGCTGTCTTCTGGGGATTTTTTCCTGTCTTCACAGCAATTTTTACATTTCCTCAAGAAAGGGCCATGCTGACGAAGGAACGAGCAGCTGACATGTACAGATTAAGTGCATATTTTGTTGCTAGGACTACAAGTGATCTCCCACTAGACCTATTGCTACCGGTACTGTTCCTCGTCATTGTATATTTCATGGCAGGCTTAAGGCTGAGTGCTGACACCTTCTTCCTAAGCATGCTTATAGTTTTCCTCTGCATTGTGGCAGCGCAGGGACTTGGACTAGCTATTGGAGCTACATTGATGGACTTAAAGAGGGCCACAACTCTAGCTTCTGTAACTGTCATGACATTCATGCTGGCTGGGGGGTTCTTTGTGAAAAAAGTTCCGGTGTTCATATCTTGGATTAGGTATATGTCTTTCAACTACCACACATACAGGCTTCTTCTTAAGGTGCAGTACGAAGCAATCACGCCAGCCATTAATGGGTTGAGCACAGACTGCGGTTTAACAGGAGTCGGTGCCCTTGTAGCCATGGTATTTGGATACCGGCTCTTGGCATACCTTTCTTTGCGGAGAATGAAGCTTCAAGGTGGAGCTTAA


Protein sequences

Name Description Sequence
ppa001882m ABC-2 type transporter family protein (best arabidopsis hit)

MEKLPSSSVLPRTKSDQLAETVAAAFKSPPLGEAIVGSADGSSTLSRKSSRRMMGASPGRGSGSVGKNTHIRKSRSAQMKLDLDEVSSGAALSRASSASLGFSFSFTGFTVPPDNIADSKPFSDDDDIQDLEAGTTRKPKFQTEPTLPIYLKFTDVTYKIILKGMRTSEEKDILNGITGSVHPGEVLALMGPSGSGKTSLLNLLGGRAVQANVTGSITYNDQTYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAALLRLSKTLTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMVYFSSIGCSPLIAMNPAEFLLDLANGNINDVSIPSELEDKVQMGNSEAADTRNGKPSPAVVHDYLVEAYETRVADEEKKKIMVPLPLDDELKLKVSISKREWGGSWWEQFSILFCRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDSNNPKGLEDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERAADMYRLSAYFVARTTSDLPLDLLLPVLFLVIVYFMAGLRLSADTFFLSMLIVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKKVPVFISWIRYMSFNYHTYRLLLKVQYEAITPAINGLSTDCGLTGVGALVAMVFGYRLLAYLSLRRMKLQGGA*

Domains

Domain Start-End Description Sequence

Seg: seg
87-110 seg

SSGAALSRASSASLGFSFSFTGFT

HMMPanther: PTHR19241:SF23
113-743 ATP-BINDING CASSETTE TRANSPORTER,ATP-BINDING CASSETTE TRANSPORTER

PDNIADSKPFSDDDDIQDLEAGTTRKPKFQTEPTLPIYLKFTDVTYKIILKGMRTSEEKDILNGITGSVHPGEVLALMGPSGSGKTSLLNLLGGRAVQANVTGSITYNDQTYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAALLRLSKTLTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMVYFSSIGCSPLIAMNPAEFLLDLANGNINDVSIPSELEDKVQMGNSEAADTRNGKPSPAVVHDYLVEAYETRVADEEKKKIMVPLPLDDELKLKVSISKREWGGSWWEQFSILFCRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDSNNPKGLEDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERAADMYRLSAYFVARTTSDLPLDLLLPVLFLVIVYFMAGLRLSADTFFLSMLIVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKKVPVFISWIRYMSFNYHTYRLLLKVQYEAITPAINGLSTDCGLTGVGALVAMVFGYRLLAYLSLRRMK

HMMPanther: PTHR19241
113-743 FAMILY NOT NAMED,ATP-BINDING CASSETTE TRANSPORTER

PDNIADSKPFSDDDDIQDLEAGTTRKPKFQTEPTLPIYLKFTDVTYKIILKGMRTSEEKDILNGITGSVHPGEVLALMGPSGSGKTSLLNLLGGRAVQANVTGSITYNDQTYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAALLRLSKTLTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMVYFSSIGCSPLIAMNPAEFLLDLANGNINDVSIPSELEDKVQMGNSEAADTRNGKPSPAVVHDYLVEAYETRVADEEKKKIMVPLPLDDELKLKVSISKREWGGSWWEQFSILFCRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDSNNPKGLEDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERAADMYRLSAYFVARTTSDLPLDLLLPVLFLVIVYFMAGLRLSADTFFLSMLIVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKKVPVFISWIRYMSFNYHTYRLLLKVQYEAITPAINGLSTDCGLTGVGALVAMVFGYRLLAYLSLRRMK

superfamily: SSF52540
130-383 P-loop containing nucleoside triphosphate hydrolases

DLEAGTTRKPKFQTEPTLPIYLKFTDVTYKIILKGMRTSEEKDILNGITGSVHPGEVLALMGPSGSGKTSLLNLLGGRAVQANVTGSITYNDQTYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAALLRLSKTLTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE

ProfileScan: PS50893
IPR003439
151-397 ABC_TRANSPORTER_2
ABC transporter-like

LKFTDVTYKIILKGMRTSEEKDILNGITGSVHPGEVLALMGPSGSGKTSLLNLLGGRAVQANVTGSITYNDQTYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAALLRLSKTLTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMVYFSSIGCSPLI

Gene3D: G3DSA:3.40.50.300
151-385 no description

LKFTDVTYKIILKGMRTSEEKDILNGITGSVHPGEVLALMGPSGSGKTSLLNLLGGRAVQANVTGSITYNDQTYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAALLRLSKTLTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM

HMMSmart: SM00382
IPR003593
183-374 ATPases associated with a variety of cellula,NBS
AAA+ ATPase domain

PGEVLALMGPSGSGKTSLLNLLGGRAVQANVTGSITYNDQTYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAALLRLSKTLTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS

HMMPfam: PF00005
IPR003439
198-325 ABC_tran
ABC transporter-like

TSLLNLLGGRAVQANVTGSITYNDQTYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAALLRLSKTLTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS

PatternScan: PS00211
IPR017871
297-311 ABC_TRANSPORTER_1
ABC transporter, conserved site

VSGGERKRVCIGNEI

HMMPfam: PF01061
IPR013525
493-702 ABC2_membrane
ABC-2 type transporter

EQFSILFCRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDSNNPKGLEDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERAADMYRLSAYFVARTTSDLPLDLLLPVLFLVIVYFMAGLRLSADTFFLSMLIVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKKVPVFISWIRYMSFNYHTYRLLLKVQY

Seg: seg
596-609 seg

DLPLDLLLPVLFLV






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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