PRGDB00172610 (ppa025472m)
| ppa025472m | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_Pythozome |
| GenBank | |
| Gene Class | CNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Prunus persica |
DNA Sequence
ATGGCGTTGAGCACCCAAAGAGCCTCTGCTTTTCATCCTTCAGCTGATCAGTCGGCTCCTCCTCAATGGAACTACGATGTGTTTTTGAGTTTCAGGGGTGTAGACACTCGAAATAACTTTGTGTCCCATTTATTCCACGAATTGCAGCACAGGGGCATTAAAACATTCAAGGATGATCCAAAGCTTGAAAGAGGGACAACTATTTCTTCTGAGCTCTTCAAAGCAATCCAAGAATCAAGGCTTGCAATCGTTGTTCTCTCGCCAAACTATGCTTCTTCTTCCTGGTGCTTGGATGAACTTACAAAGATTCTCCAATGCATGAAATCCAACGGCACACTTCTGCCTGTGTTTTATAATGTGGATCCCTCCGATGTGCGAAAACAAAGCGGCAGTTTTGCTGACGCCTTCGCTGAGCATGAGAAAAGGTTTAGGGAAGACATCGATAAGGTGAAGCGCTGGAGAGATGCTTTAACAGAAGTTGCCAATTTAGCTGGGATAGATTCAAAAAATCAGTGTGAAAGAAAGCTCATTGAAAAGATTGTTGAATGGGTGTGGAGGAAAGTGCATCGCACATTCAAATTGTTAGATACAACAGAGTTAGTGGGAATTAAGTTTACACGAGAGCAAATGAATTTGCTTGTAGCTCCTACAGATGATGTTCGCTTTGTAGGGATATGGGGAATGGGCGGCATCGGCAAGACAACCATTGCTGCGCTAGTTCATGACAGCATTTGTATGCAGTTTGAAGTTAGTTGCTTTCTTGGTAATGTTAGAGAGGTTTCTCAACGTGGTAATCTTGTTGATCTACAAAGAAAGCTTCTTTCCCCGATCTTAAAGGAGCAAATAACTGATGTTAGGGATGAACAGTCGGGAACCTATTTCATTAAGAGTTGCTTATGTAATAAAAAGGTTCTTCTCATTCTTGATGATGTGAATGAATCAAGCCAACTAGAGAAATTTGCTAAGGAAAAGGATTGGTTTGGTAAGGGGAGTATCATCATCATTACAACTAGAGATGAACGGTTGGTTAAAAAGCATGATATGGAGATATCATATAAGGTAGAGGTATTAGGTGATGATGAGGCTCTTGAGCTCTTTAGTCTAAACGCCTTTAAAAAATTTGAGCCTGAGGAAGGTTTTTTGGAATTGTCCAAGTGCTTTGTAAATTATGCTGGAGGCCTTCCATTAGCTCTTAAAATTTTGGGATGCTCTATGTATAAGAGAGATCGAGATGAATGGAAAAACGAATTGGATAAGCTACGGAAAATTCCTGAGACTGAAATTTTTGATTTGCTCAAAATCAGTTTTGATAGATTAGATGAGATGAACAAGAATATATTTCTTGATGTTGCATTTTTTCATAAGGGGAAGGGCAAGAATGAAGTAATTGGAATACTAGACAGTTGTGACCGTTATGGTGGGATAAATGCTCTGGTTGAGAAGTCGCTCTTAACTATTGATATTTCATACAACGTTAACATTGTTGGGATGCATGATTTGATACAAGAAATGGCATTTGAAATTATTCGTCAAGAGTCTCCTGAAGAGCCCGGTGGACGTAGTCGATTGTGTCATCGTAATGACATCATTCATGTAATGATAAACAACACGGCAACTAACAAAATTCAAGGCATTGCCTTAAGCATGACAGAACTTGAAAAGGCGGATTGGAATTGTGAAGCATTCTCTAAGATGATTAACTTGAAATTTCTTGAAGTTGATAATGTGATCATTTCCCCAATGTCAATCCCCAAAATTCTTCCTAATTCCTTAAGAATTATGAAATGGAATCGGTATTCTTCCAAATTTCTCCCATCAAATTTTCAACCGACTAAACTTGTTTCACTTGAGATGCAGGACAGCAAACTAGTTGGGCTCTGGGATGACAAAATTGACTTGCCCAATTTGAAATACATGGACCTTAGTGGCTCTCAAAACTTGGAAACAACCCCAAATTTCACTGGCATTCCAAAACTTGAGGTGTTGAATCTTGAAAGGTGTGAGAATTTAGTTGAGATTCACCCATCCATTGCATTTCTCAAATGGCTTACAGATTTAATTCTAAATAGATGCAAAAGTGTTAAGGGTCTTCCAAGGGAGGTAGAAATGGATTCTCTTGTACATTTCGAGGTTGAAGATTGCTCAAAACTGAAAAAGATTCCAGAATTTTCAAGACAAATGGAAAAGTTGTCAATTCTTAATTTGAGGGGGACGCCCATTGAGAAATTACCTTCATCAATTGGACGTCTTGTTGGCCTTACTTTATTGGATGTAAGCAATTGTGAAAATCTCTGGGGTCTTTCGAGCGAAATTTGTAATTTGAAGTCTCTTCAAGAGCTCACGCGTAATAAATCAAGGTTTTGGTGGGGCCTCCAAAGAAAGGCTTTTGTGTTGGGTTCGCTATATGGATTATGGTCTTTGAAGTATTTGAATGTGAGTGATTGTGGTCTTTGTGAAGGGGATATTCCCGTCGATATTGACTGCTTATCCTCTTTAGAAATATTAGACCTTAGTCGAAACAATTTTGTTAGCCTTCCTGCAAGCATTGGATGTCTTACTAAGCTTTGGTCATTTTCGGTGAGAGGGTGCCAAAGGCTTCAACAATTGCCCCATTTCCGCTTTGGATTGGTTGATAATGAAGGCTTCAGCTCTATTTACATGCACACAGACGATTGCACTTCCTTAAAAACGTTGCCAAACTTGAGCATAAAAGGAGGAAGAGGTTTTGTTTCGTTGAGTTGTGTGAATTGCTCTGGATTGGTTGAGAATGATGGCTACGATGATAGTATAATACTTGGAATGCTCTGGACTGCTCTGGATTGGGGACTCCTTCAGGTACGCCCTTCGCCTATTCCAACGACTTCCGCTTTCCAAATTGTAACACCTGGAAGTAGAATTCCAGAGTGGTTCAATAATCAAACTGTAGGAGATTCCTTAATTGTGGAGCTACCTCCATGTACCACGTCCATTTGGATTGCTTTTTGTGCTGTCTTTGAAGAAGGTGCCCCTGTGGATCACCCAAATCCACCTCATGACCTTTCTACCTATTTTCGAATTGAATGTCGCCCAGGAGAAGGTCGCCCTGTGCATAGTTTTGGAATTAATAAAGGCCATCTTGTGTCACCTCACCTTTGGGTATCTTGTGTATATCATTTTGTAGTCGACAAAGAATGCAGTCAGATGAAGATTTCATTCCATAAGTTTTCTGAGGATGGCATAAACAGAATATATTGGTCGGGTATAAAGAAGTGTGGGTTCCGTTTGGTACACAAGCAAGACGGGAAAAAACTCAACCAAATCATGATGATGAACCACTCCATCAACATCAGCACAAAAGCTACTTCTCCTCACAATTCTCACAATTCAGTTGATGCAAGTGGAAGCTCTCACCAAAAATCTCTCTGCCGCAAAAGCTATGCTCTTTCCAAATGGTTTTTAACAAAACTTGTAAAGATTTTCTCCCTCTTTTTAACAACTGCAGTTTTTATCAAATCTTTCAACAATAGCGAACAATGGGGATGCATAGGACTTTTGATTTGGAGG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| ppa025472m | disease resistance protein (TIR-NBS-LRR class), putative (best arabidopsis hit) | MALSTQRASAFHPSADQSAPPQWNYDVFLSFRGVDTRNNFVSHLFHELQHRGIKTFKDDPKLERGTTISSELFKAIQESRLAIVVLSPNYASSSWCLDELTKILQCMKSNGTLLPVFYNVDPSDVRKQSGSFADAFAEHEKRFREDIDKVKRWRDALTEVANLAGIDSKNQCERKLIEKIVEWVWRKVHRTFKLLDTTELVGIKFTREQMNLLVAPTDDVRFVGIWGMGGIGKTTIAALVHDSICMQFEVSCFLGNVREVSQRGNLVDLQRKLLSPILKEQITDVRDEQSGTYFIKSCLCNKKVLLILDDVNESSQLEKFAKEKDWFGKGSIIIITTRDERLVKKHDMEISYKVEVLGDDEALELFSLNAFKKFEPEEGFLELSKCFVNYAGGLPLALKILGCSMYKRDRDEWKNELDKLRKIPETEIFDLLKISFDRLDEMNKNIFLDVAFFHKGKGKNEVIGILDSCDRYGGINALVEKSLLTIDISYNVNIVGMHDLIQEMAFEIIRQESPEEPGGRSRLCHRNDIIHVMINNTATNKIQGIALSMTELEKADWNCEAFSKMINLKFLEVDNVIISPMSIPKILPNSLRIMKWNRYSSKFLPSNFQPTKLVSLEMQDSKLVGLWDDKIDLPNLKYMDLSGSQNLETTPNFTGIPKLEVLNLERCENLVEIHPSIAFLKWLTDLILNRCKSVKGLPREVEMDSLVHFEVEDCSKLKKIPEFSRQMEKLSILNLRGTPIEKLPSSIGRLVGLTLLDVSNCENLWGLSSEICNLKSLQELTRNKSRFWWGLQRKAFVLGSLYGLWSLKYLNVSDCGLCEGDIPVDIDCLSSLEILDLSRNNFVSLPASIGCLTKLWSFSVRGCQRLQQLPHFRFGLVDNEGFSSIYMHTDDCTSLKTLPNLSIKGGRGFVSLSCVNCSGLVENDGYDDSIILGMLWTALDWGLLQVRPSPIPTTSAFQIVTPGSRIPEWFNNQTVGDSLIVELPPCTTSIWIAFCAVFEEGAPVDHPNPPHDLSTYFRIECRPGEGRPVHSFGINKGHLVSPHLWVSCVYHFVVDKECSQMKISFHKFSEDGINRIYWSGIKKCGFRLVHKQDGKKLNQIMMMNHSINISTKATSPHNSHNSVDASGSSHQKSLCRKSYALSKWFLTKLVKIFSLFLTTAVFIKSFNNSEQWGCIGLLIWR |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
13-166 | Toll/Interleukin receptor TIR domain Toll/interleukin-1 receptor homology (TIR) domain
|
PSADQSAPPQWNYDVFLSFRGVDTRNNFVSHLFHELQHRGIKTFKDDPKLERGTTISSELFKAIQESRLAIVVLSPNYASSSWCLDELTKILQCMKSNGTLLPVFYNVDPSDVRKQSGSFADAFAEHEKRFREDIDKVKRWRDALTEVANLAGI |
| Gene3D: G3DSA:3.40.50.10140 | 22-157 | no description | QWNYDVFLSFRGVDTRNNFVSHLFHELQHRGIKTFKDDPKLERGTTISSELFKAIQESRLAIVVLSPNYASSSWCLDELTKILQCMKSNGTLLPVFYNVDPSDVRKQSGSFADAFAEHEKRFREDIDKVKRWRDAL |
| ProfileScan: PS50104 IPR000157
|
23-163 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
WNYDVFLSFRGVDTRNNFVSHLFHELQHRGIKTFKDDPKLERGTTISSELFKAIQESRLAIVVLSPNYASSSWCLDELTKILQCMKSNGTLLPVFYNVDPSDVRKQSGSFADAFAEHEKRFREDIDKVKRWRDALTEVANL |
| HMMSmart: SM00255 IPR000157
|
24-163 | Toll Toll/interleukin-1 receptor homology (TIR) domain
|
NYDVFLSFRGVDTRNNFVSHLFHELQHRGIKTFKDDPKLERGTTISSELFKAIQESRLAIVVLSPNYASSSWCLDELTKILQCMKSNGTLLPVFYNVDPSDVRKQSGSFADAFAEHEKRFREDIDKVKRWRDALTEVANL |
| HMMPfam: PF01582 IPR000157
|
27-158 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VFLSFRGVDTRNNFVSHLFHELQHRGIKTFKDDPKLERGTTISSELFKAIQESRLAIVVLSPNYASSSWCLDELTKILQCMKSNGTLLPVFYNVDPSDVRKQSGSFADAFAEHEKRFREDIDKVKRWRDALT |
| HMMPanther: PTHR11017:SF20 | 48-980 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | LQHRGIKTFKDDPKLERGTTISSELFKAIQESRLAIVVLSPNYASSSWCLDELTKILQCMKSNGTLLPVFYNVDPSDVRKQSGSFADAFAEHEKRFREDIDKVKRWRDALTEVANLAGIDSKNQCERKLIEKIVEWVWRKVHRTFKLLDTTELVGIKFTREQMNLLVAPTDDVRFVGIWGMGGIGKTTIAALVHDSICMQFEVSCFLGNVREVSQRGNLVDLQRKLLSPILKEQITDVRDEQSGTYFIKSCLCNKKVLLILDDVNESSQLEKFAKEKDWFGKGSIIIITTRDERLVKKHDMEISYKVEVLGDDEALELFSLNAFKKFEPEEGFLELSKCFVNYAGGLPLALKILGCSMYKRDRDEWKNELDKLRKIPETEIFDLLKISFDRLDEMNKNIFLDVAFFHKGKGKNEVIGILDSCDRYGGINALVEKSLLTIDISYNVNIVGMHDLIQEMAFEIIRQESPEEPGGRSRLCHRNDIIHVMINNTATNKIQGIALSMTELEKADWNCEAFSKMINLKFLEVDNVIISPMSIPKILPNSLRIMKWNRYSSKFLPSNFQPTKLVSLEMQDSKLVGLWDDKIDLPNLKYMDLSGSQNLETTPNFTGIPKLEVLNLERCENLVEIHPSIAFLKWLTDLILNRCKSVKGLPREVEMDSLVHFEVEDCSKLKKIPEFSRQMEKLSILNLRGTPIEKLPSSIGRLVGLTLLDVSNCENLWGLSSEICNLKSLQELTRNKSRFWWGLQRKAFVLGSLYGLWSLKYLNVSDCGLCEGDIPVDIDCLSSLEILDLSRNNFVSLPASIGCLTKLWSFSVRGCQRLQQLPHFRFGLVDNEGFSSIYMHTDDCTSLKTLPNLSIKGGRGFVSLSCVNCSGLVENDGYDDSIILGMLWTALDWGLLQVRPSPIPTTSAFQIVTPGSRIPEWFNNQTVGDSLI |
| HMMPanther: PTHR11017 | 48-980 | FAMILY NOT NAMED,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | LQHRGIKTFKDDPKLERGTTISSELFKAIQESRLAIVVLSPNYASSSWCLDELTKILQCMKSNGTLLPVFYNVDPSDVRKQSGSFADAFAEHEKRFREDIDKVKRWRDALTEVANLAGIDSKNQCERKLIEKIVEWVWRKVHRTFKLLDTTELVGIKFTREQMNLLVAPTDDVRFVGIWGMGGIGKTTIAALVHDSICMQFEVSCFLGNVREVSQRGNLVDLQRKLLSPILKEQITDVRDEQSGTYFIKSCLCNKKVLLILDDVNESSQLEKFAKEKDWFGKGSIIIITTRDERLVKKHDMEISYKVEVLGDDEALELFSLNAFKKFEPEEGFLELSKCFVNYAGGLPLALKILGCSMYKRDRDEWKNELDKLRKIPETEIFDLLKISFDRLDEMNKNIFLDVAFFHKGKGKNEVIGILDSCDRYGGINALVEKSLLTIDISYNVNIVGMHDLIQEMAFEIIRQESPEEPGGRSRLCHRNDIIHVMINNTATNKIQGIALSMTELEKADWNCEAFSKMINLKFLEVDNVIISPMSIPKILPNSLRIMKWNRYSSKFLPSNFQPTKLVSLEMQDSKLVGLWDDKIDLPNLKYMDLSGSQNLETTPNFTGIPKLEVLNLERCENLVEIHPSIAFLKWLTDLILNRCKSVKGLPREVEMDSLVHFEVEDCSKLKKIPEFSRQMEKLSILNLRGTPIEKLPSSIGRLVGLTLLDVSNCENLWGLSSEICNLKSLQELTRNKSRFWWGLQRKAFVLGSLYGLWSLKYLNVSDCGLCEGDIPVDIDCLSSLEILDLSRNNFVSLPASIGCLTKLWSFSVRGCQRLQQLPHFRFGLVDNEGFSSIYMHTDDCTSLKTLPNLSIKGGRGFVSLSCVNCSGLVENDGYDDSIILGMLWTALDWGLLQVRPSPIPTTSAFQIVTPGSRIPEWFNNQTVGDSLI |
| superfamily: SSF52540 | 183-428 | P-loop containing nucleoside triphosphate hydrolases | WVWRKVHRTFKLLDTTELVGIKFTREQMNLLVAPTDDVRFVGIWGMGGIGKTTIAALVHDSICMQFEVSCFLGNVREVSQRGNLVDLQRKLLSPILKEQITDVRDEQSGTYFIKSCLCNKKVLLILDDVNESSQLEKFAKEKDWFGKGSIIIITTRDERLVKKHDMEISYKVEVLGDDEALELFSLNAFKKFEPEEGFLELSKCFVNYAGGLPLALKILGCSMYKRDRDEWKNELDKLRKIPETEI |
| HMMPfam: PF00931 IPR002182
|
211-458 | NB-ARC,NBS NB-ARC
|
NLLVAPTDDVRFVGIWGMGGIGKTTIAALVHDSICMQFEVSCFLGNVREVSQRGNLVDLQRKLLSPILKEQITDVRDEQSGTYFIKSCLCNKKVLLILDDVNESSQLEKFAKEKDWFGKGSIIIITTRDERLVKKHDMEISYKVEVLGDDEALELFSLNAFKKFEPEEGFLELSKCFVNYAGGLPLALKILGCSMYKRDRDEWKNELDKLRKIPETEIFDLLKISFDRLDEMNKNIFLDVAFFHKGKG |
| FPrintScan: PR00364 IPR000767
|
222-237 | DISEASERSIST Disease resistance protein
|
FVGIWGMGGIGKTTIA |
| FPrintScan: PR00364 IPR000767
|
298-312 | DISEASERSIST Disease resistance protein
|
CLCNKKVLLILDDVN |
| FPrintScan: PR00364 IPR000767
|
391-405 | DISEASERSIST Disease resistance protein
|
AGGLPLALKILGCSM |
| Coil: coil | 403-424 | coiled-coil | CSMYKRDRDEWKNELDKLRKIP |
| superfamily: SSF52058 | 508-919 | L domain-like,LRR | IIRQESPEEPGGRSRLCHRNDIIHVMINNTATNKIQGIALSMTELEKADWNCEAFSKMINLKFLEVDNVIISPMSIPKILPNSLRIMKWNRYSSKFLPSNFQPTKLVSLEMQDSKLVGLWDDKIDLPNLKYMDLSGSQNLETTPNFTGIPKLEVLNLERCENLVEIHPSIAFLKWLTDLILNRCKSVKGLPREVEMDSLVHFEVEDCSKLKKIPEFSRQMEKLSILNLRGTPIEKLPSSIGRLVGLTLLDVSNCENLWGLSSEICNLKSLQELTRNKSRFWWGLQRKAFVLGSLYGLWSLKYLNVSDCGLCEGDIPVDIDCLSSLEILDLSRNNFVSLPASIGCLTKLWSFSVRGCQRLQQLPHFRFGLVDNEGFSSIYMHTDDCTSLKTLPNLSIKGGRGFVSLSCVNCSG |
| Gene3D: G3DSA:3.80.10.10 | 578-871 | no description | ISPMSIPKILPNSLRIMKWNRYSSKFLPSNFQPTKLVSLEMQDSKLVGLWDDKIDLPNLKYMDLSGSQNLETTPNFTGIPKLEVLNLERCENLVEIHPSIAFLKWLTDLILNRCKSVKGLPREVEMDSLVHFEVEDCSKLKKIPEFSRQMEKLSILNLRGTPIEKLPSSIGRLVGLTLLDVSNCENLWGLSSEICNLKSLQELTRNKSRFWWGLQRKAFVLGSLYGLWSLKYLNVSDCGLCEGDIPVDIDCLSSLEILDLSRNNFVSLPASIGCLTKLWSFSVRGCQRLQQLPH |
| FPrintScan: PR00364 IPR000767
|
631-647 | DISEASERSIST Disease resistance protein
|
IDLPNLKYMDLSGSQNL |
| ProfileScan: PS51450 IPR001611
|
658-681 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
KLEVLNLERCENLVEIHPSIAFLK |
| HMMPfam: PF00560 IPR001611
|
658-678 | LRR_1 Leucine-rich repeat
|
KLEVLNLERCENLVEIHPSIA |
| HMMSmart: SM00369 IPR003591
|
727-750 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
MEKLSILNLRGTPIEKLPSSIGRL |
| ProfileScan: PS51450 IPR001611
|
729-750 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
KLSILNLRGTPIEKLPSSIGRL |
| HMMSmart: SM00369 IPR003591
|
829-852 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LSSLEILDLSRNNFVSLPASIGCL |
| HMMPfam: PF00560 IPR001611
|
831-852 | LRR_1 Leucine-rich repeat
|
SLEILDLSRNNFVSLPASIGCL |
| ProfileScan: PS51450 IPR001611
|
831-852 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLEILDLSRNNFVSLPASIGCL |
List of Contributions
There has not been any contribution yet.
