PRGDB00181462 (Si025947m)

Si025947m
Gene Type	Putative_R-Genes,_predicted_from_Pythozome
GenBank
Gene Class	CNL
Domain Type	NBS, LRR, Others
Gene Species	Setaria italica
	Comment?

NB-ARC domain-containing disease resistance protein (best arabidopsis hit); disease resistance protein RPM1, putative (best rice hit)

DNA Sequence

ATGGCTGAAGCAGTTGTAGGGTTGCTGATTGGCAAGCTCGGTGCAGCTTTGGTGAAAGAGGCAGCAAGTTCTGGTGCATCACTGATCTGCCACGAAGCCTCTGCCCTCAAGGGTCTCTTTGGTGAGATCCATGAAGCCAAGGATGAGCTTGAGAGTATGCAGGCTTACTTGAAAACAGCAGAGCGGTTCAAGGACACTGATGAGACCACCGGCCTCTTCGTCGACAGAATCAGGGGCTTCGCTTTTGAGATCGAGGATGTTGTTGATGAGTTCACCTACAAGCTGGAGGACAAGCACGGAGGGTTTGTTTCCAAGATGAAGAAGAGGATCAAGTATGCCAGTACCTGGCGCCGGCTTGCGCACAAGCTGAATGATATCAAGGGCAGGCTTCAAGGGGCTAAGCAGCGGAACCAGGACTACACCATGAAACAAACGGATAGAAATGCTGGAGGCATTGCTTTTCATGCCAATCAAGCTTTGAATTTCACAAGGGATGAGGACCTTGTGGGGATTACCGAGCACAAGAAGCAACTGGTTCAATGGCTAGCAGGTGATTTAGAACAGAGATGCAAAATATTCGCTGTTTGGGGCATGCCTGGTGTGGGGAAAACAACTTTGGTTGCTCATGTGTACAAGACCATCAAAATGGACTTTGATGCTGCTGCATGGGTAACCGTGTCACAGAGTTATGATGTTCAAGAGGTGTTGAAGAAAATTGCTGGAGAGTTTGGCATCACAGCTGATGGTGCCAACATGGAAATGGAAAGACTAGCTCCGACCATCTATGAGTACCTAAAAGGTAAAAGGTACATCTTAGTTCTGGATGACATTTGGACTGCAGATGTCTGGTCAGAGATAAGGACTGTTTTCCCATCTAATTGTATTGGTCGATTTGTTATCACATCAAGAAAGCATGAAGTATCATTATTAGGAACCAGTAATTCAGCTATTCACTTGGAACCACTTGGCAAAGATGACTCTTGGGAGTTATTCTGCAAATCAGCCTTTTGGAACGATGGTGACAGAAAGTGCCCATTGCACTTGAAGGTTTTGGCTTTGAAATTTGTCGACAAGTGTGAAGGGTTGCCTATTGCTATTGCATGCATCGGCAGCCAACTATCTGCGAAAGGACAAACTTCTGCCGAATGGGAAAAAGCATATGATGAGTTAGAGCTGCAGTTGGTTAAAAATGTGATGCCTCGTGTTGAGACTATTCTTAAAGTCAGCTTGGAGGACCTTCCATGTGATTTGAAAAATTGTTTCTTACACTGTGCATTATTCCCAGAAGATTATCCCATCAAGAGGAGGACAGTAATGAGGCACTGGATTAGTAGTGGGTTCATCAAGAAGAAGGGGAACCAAACTTTGGAGGAAGTGGCGGAGGAGTACTTGACTGAGCTTGTGAACCGAAGCCTATTACAGGTAGTGAAGAGGAATTATACTGGGCGGTTGAAATGTTGTCAAATGCATGATGTAATACGGCTTGTTGCGCTCAAAAAAGCAGAGAAAGAATGCTTTGGTAAAGTGTATGATGGCTCTGGGGAATTTTCTGGAGGGCCCACACGTCGTATATCAATCCAGAGTAGAAACCTTGACCGAATTAGTCCATCAAATGCATCACATATCCGTTCACTTCATGTTTTTGAGAGGTATATCGATATTGATTTGCTGAGGCCCATCCTAACATCTTCGAATTTGCTGTCAACGTTGGATCTGAAAGGTGCTTGTATCAAGATGTTGCCTACTGAGGTATTCAACTTGTTTCATCTGCGGTATTTGGGCCTTAGATCTACTGCTATTGAAAGTCTACCTGAAACAATAGGAAGGTTGCAAAACTTGGAAGTGTTGGATGCTTGTAATGCTCCGTTGTTGTATTTGCCAAATAACATTGTAAAACTTCAGAAGTTGAGATACCTTTATGCATGTAATGTTTATCGTGAAGGTGAAGATATTCGCCGTCGCAGTGGTGTAAAGGTGCCTAGTGGCATAAGGCACTTGATGTCACTGCAAGCTTTGCAATGTGTGGAGGCAAGTCCAGAAATTCTGCGTGAGGTTGGATATTTGACAGAGCTAAGAACATTCAGTGTCTGCAATGTGAGAAGTGAACACTCTGGTAACTTAAGAGATGCTGTCAACAAAATGAGTCATCTTGTTCATCTAGAAATTATAACTCTAGGGGAGAAGGAAGTGCTGCATCTAGAGGGACTTTGTTTACCTCCAACCTTTTCTTGGCTTTGTTTACAAGGACAGCTGGAGAGAAAATCAATACCGAAGGTTCTGTCATCTTGGTCTCGCCTCAGTAGTCTCACAAAGTTGGAGATGGAATTCTGCAGAATTGATGAGGAGTCGTTTCCCAGTTTGTTGGTGCTACGTGGTTTATGTCTCCTTAGCCTTACCAAGGCTTTTGATGGGAAGAAGCTGCACTTCACTGCAGGGTGTTTCCCAAGACTTCAAGTTCTATATATATGGCACGCACCACAGCTCAATCAAGTTCAAATAGAACAGGGTGCGATGTCAAACCTTGCTGAGCTCAACTTTGGTGACTGTCCTATGTTGAAGTATCTTCCTCAAGGTATTGAACACCTTAAAAACCTTGTGCAGTTATTACTGAAGGATACATCAGAAGAGCTCGTAGAGAGGCTTTGGCGGAAGGGAGGACCAGATGAATGCAAGGACGATAGTATGGACATTAGCCACATCAGAAAGGTTTTTGTTCTTATGGGCACCCGGGGATGGATAATGTGA

Protein sequences

Name	Description	Sequence
Si025947m	NB-ARC domain-containing disease resistance protein (best arabidopsis hit); disease resistance protein RPM1, putative (best rice hit)	MAEAVVGLLIGKLGAALVKEAASSGASLICHEASALKGLFGEIHEAKDELESMQAYLKTAERFKDTDETTGLFVDRIRGFAFEIEDVVDEFTYKLEDKHGGFVSKMKKRIKYASTWRRLAHKLNDIKGRLQGAKQRNQDYTMKQTDRNAGGIAFHANQALNFTRDEDLVGITEHKKQLVQWLAGDLEQRCKIFAVWGMPGVGKTTLVAHVYKTIKMDFDAAAWVTVSQSYDVQEVLKKIAGEFGITADGANMEMERLAPTIYEYLKGKRYILVLDDIWTADVWSEIRTVFPSNCIGRFVITSRKHEVSLLGTSNSAIHLEPLGKDDSWELFCKSAFWNDGDRKCPLHLKVLALKFVDKCEGLPIAIACIGSQLSAKGQTSAEWEKAYDELELQLVKNVMPRVETILKVSLEDLPCDLKNCFLHCALFPEDYPIKRRTVMRHWISSGFIKKKGNQTLEEVAEEYLTELVNRSLLQVVKRNYTGRLKCCQMHDVIRLVALKKAEKECFGKVYDGSGEFSGGPTRRISIQSRNLDRISPSNASHIRSLHVFERYIDIDLLRPILTSSNLLSTLDLKGACIKMLPTEVFNLFHLRYLGLRSTAIESLPETIGRLQNLEVLDACNAPLLYLPNNIVKLQKLRYLYACNVYREGEDIRRRSGVKVPSGIRHLMSLQALQCVEASPEILREVGYLTELRTFSVCNVRSEHSGNLRDAVNKMSHLVHLEIITLGEKEVLHLEGLCLPPTFSWLCLQGQLERKSIPKVLSSWSRLSSLTKLEMEFCRIDEESFPSLLVLRGLCLLSLTKAFDGKKLHFTAGCFPRLQVLYIWHAPQLNQVQIEQGAMSNLAELNFGDCPMLKYLPQGIEHLKNLVQLLLKDTSEELVERLWRKGGPDECKDDSMDISHIRKVFVLMGTRGWIM*

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR23155	14-913	FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	GAALVKEAASSGASLICHEASALKGLFGEIHEAKDELESMQAYLKTAERFKDTDETTGLFVDRIRGFAFEIEDVVDEFTYKLEDKHGGFVSKMKKRIKYASTWRRLAHKLNDIKGRLQGAKQRNQDYTMKQTDRNAGGIAFHANQALNFTRDEDLVGITEHKKQLVQWLAGDLEQRCKIFAVWGMPGVGKTTLVAHVYKTIKMDFDAAAWVTVSQSYDVQEVLKKIAGEFGITADGANMEMERLAPTIYEYLKGKRYILVLDDIWTADVWSEIRTVFPSNCIGRFVITSRKHEVSLLGTSNSAIHLEPLGKDDSWELFCKSAFWNDGDRKCPLHLKVLALKFVDKCEGLPIAIACIGSQLSAKGQTSAEWEKAYDELELQLVKNVMPRVETILKVSLEDLPCDLKNCFLHCALFPEDYPIKRRTVMRHWISSGFIKKKGNQTLEEVAEEYLTELVNRSLLQVVKRNYTGRLKCCQMHDVIRLVALKKAEKECFGKVYDGSGEFSGGPTRRISIQSRNLDRISPSNASHIRSLHVFERYIDIDLLRPILTSSNLLSTLDLKGACIKMLPTEVFNLFHLRYLGLRSTAIESLPETIGRLQNLEVLDACNAPLLYLPNNIVKLQKLRYLYACNVYREGEDIRRRSGVKVPSGIRHLMSLQALQCVEASPEILREVGYLTELRTFSVCNVRSEHSGNLRDAVNKMSHLVHLEIITLGEKEVLHLEGLCLPPTFSWLCLQGQLERKSIPKVLSSWSRLSSLTKLEMEFCRIDEESFPSLLVLRGLCLLSLTKAFDGKKLHFTAGCFPRLQVLYIWHAPQLNQVQIEQGAMSNLAELNFGDCPMLKYLPQGIEHLKNLVQLLLKDTSEELVERLWRKGGPDECKDDSMDISHIRKVFVLMGTRGWI
HMMPanther: PTHR23155:SF125	14-913	PUTATIVE RPR1 (PUTATIVE UNCHARACTERIZED PROTEIN) (OS01G0547000 PROTEIN),PUTATIVE RPR1 (PUTATIVE UNCHARACTERIZED PROTEIN) (OS01G0547000 PROTEIN)	GAALVKEAASSGASLICHEASALKGLFGEIHEAKDELESMQAYLKTAERFKDTDETTGLFVDRIRGFAFEIEDVVDEFTYKLEDKHGGFVSKMKKRIKYASTWRRLAHKLNDIKGRLQGAKQRNQDYTMKQTDRNAGGIAFHANQALNFTRDEDLVGITEHKKQLVQWLAGDLEQRCKIFAVWGMPGVGKTTLVAHVYKTIKMDFDAAAWVTVSQSYDVQEVLKKIAGEFGITADGANMEMERLAPTIYEYLKGKRYILVLDDIWTADVWSEIRTVFPSNCIGRFVITSRKHEVSLLGTSNSAIHLEPLGKDDSWELFCKSAFWNDGDRKCPLHLKVLALKFVDKCEGLPIAIACIGSQLSAKGQTSAEWEKAYDELELQLVKNVMPRVETILKVSLEDLPCDLKNCFLHCALFPEDYPIKRRTVMRHWISSGFIKKKGNQTLEEVAEEYLTELVNRSLLQVVKRNYTGRLKCCQMHDVIRLVALKKAEKECFGKVYDGSGEFSGGPTRRISIQSRNLDRISPSNASHIRSLHVFERYIDIDLLRPILTSSNLLSTLDLKGACIKMLPTEVFNLFHLRYLGLRSTAIESLPETIGRLQNLEVLDACNAPLLYLPNNIVKLQKLRYLYACNVYREGEDIRRRSGVKVPSGIRHLMSLQALQCVEASPEILREVGYLTELRTFSVCNVRSEHSGNLRDAVNKMSHLVHLEIITLGEKEVLHLEGLCLPPTFSWLCLQGQLERKSIPKVLSSWSRLSSLTKLEMEFCRIDEESFPSLLVLRGLCLLSLTKAFDGKKLHFTAGCFPRLQVLYIWHAPQLNQVQIEQGAMSNLAELNFGDCPMLKYLPQGIEHLKNLVQLLLKDTSEELVERLWRKGGPDECKDDSMDISHIRKVFVLMGTRGWI
Coil: coil	123-144	coiled-coil	LNDIKGRLQGAKQRNQDYTMKQ
superfamily: SSF52540	151-398	P-loop containing nucleoside triphosphate hydrolases	GIAFHANQALNFTRDEDLVGITEHKKQLVQWLAGDLEQRCKIFAVWGMPGVGKTTLVAHVYKTIKMDFDAAAWVTVSQSYDVQEVLKKIAGEFGITADGANMEMERLAPTIYEYLKGKRYILVLDDIWTADVWSEIRTVFPSNCIGRFVITSRKHEVSLLGTSNSAIHLEPLGKDDSWELFCKSAFWNDGDRKCPLHLKVLALKFVDKCEGLPIAIACIGSQLSAKGQTSAEWEKAYDELELQLVKNV
Gene3D: G3DSA:3.40.50.300	170-290	no description	GITEHKKQLVQWLAGDLEQRCKIFAVWGMPGVGKTTLVAHVYKTIKMDFDAAAWVTVSQSYDVQEVLKKIAGEFGITADGANMEMERLAPTIYEYLKGKRYILVLDDIWTADVWSEIRTVF
HMMPfam: PF00931 IPR002182	172-450	NB-ARC,NBS NB-ARC	TEHKKQLVQWLAGDLEQRCKIFAVWGMPGVGKTTLVAHVYKTIKMDFDAAAWVTVSQSYDVQEVLKKIAGEFGITADGANMEMERLAPTIYEYLKGKRYILVLDDIWTADVWSEIRTVFPSNCIGRFVITSRKHEVSLLGTSNSAIHLEPLGKDDSWELFCKSAFWNDGDRKCPLHLKVLALKFVDKCEGLPIAIACIGSQLSAKGQTSAEWEKAYDELELQLVKNVMPRVETILKVSLEDLPCDLKNCFLHCALFPEDYPIKRRTVMRHWISSGFIKK
FPrintScan: PR00364 IPR000767	192-207	DISEASERSIST Disease resistance protein	IFAVWGMPGVGKTTLV
FPrintScan: PR00364 IPR000767	264-278	DISEASERSIST Disease resistance protein	YLKGKRYILVLDDIW
FPrintScan: PR00364 IPR000767	359-373	DISEASERSIST Disease resistance protein	CEGLPIAIACIGSQL
superfamily: SSF52058	488-872	L domain-like,LRR	QMHDVIRLVALKKAEKECFGKVYDGSGEFSGGPTRRISIQSRNLDRISPSNASHIRSLHVFERYIDIDLLRPILTSSNLLSTLDLKGACIKMLPTEVFNLFHLRYLGLRSTAIESLPETIGRLQNLEVLDACNAPLLYLPNNIVKLQKLRYLYACNVYREGEDIRRRSGVKVPSGIRHLMSLQALQCVEASPEILREVGYLTELRTFSVCNVRSEHSGNLRDAVNKMSHLVHLEIITLGEKEVLHLEGLCLPPTFSWLCLQGQLERKSIPKVLSSWSRLSSLTKLEMEFCRIDEESFPSLLVLRGLCLLSLTKAFDGKKLHFTAGCFPRLQVLYIWHAPQLNQVQIEQGAMSNLAELNFGDCPMLKYLPQGIEHLKNLVQLLLKD
Gene3D: G3DSA:3.80.10.10	538-668	no description	NASHIRSLHVFERYIDIDLLRPILTSSNLLSTLDLKGACIKMLPTEVFNLFHLRYLGLRSTAIESLPETIGRLQNLEVLDACNAPLLYLPNNIVKLQKLRYLYACNVYREGEDIRRRSGVKVPSGIRHLMS
Seg: seg	561-572	seg	LTSSNLLSTLDL
FPrintScan: PR00364 IPR000767	608-624	DISEASERSIST Disease resistance protein	GRLQNLEVLDACNAPLL
Gene3D: G3DSA:3.80.10.10	669-873	no description	LQALQCVEASPEILREVGYLTELRTFSVCNVRSEHSGNLRDAVNKMSHLVHLEIITLGEKEVLHLEGLCLPPTFSWLCLQGQLERKSIPKVLSSWSRLSSLTKLEMEFCRIDEESFPSLLVLRGLCLLSLTKAFDGKKLHFTAGCFPRLQVLYIWHAPQLNQVQIEQGAMSNLAELNFGDCPMLKYLPQGIEHLKNLVQLLLKDT
Seg: seg	787-798	seg	LLVLRGLCLLSL

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Analyses

Blast

Blast matches against Reference R-Genes. Show