PRGDB00181462 (Si025947m)
Si025947m | |
---|---|
Gene Type | Putative_R-Genes,_predicted_from_Pythozome |
GenBank | |
Gene Class | CNL |
Domain Type | NBS, LRR, Others |
Gene Species | Setaria italica |
DNA Sequence
ATGGCTGAAGCAGTTGTAGGGTTGCTGATTGGCAAGCTCGGTGCAGCTTTGGTGAAAGAGGCAGCAAGTTCTGGTGCATCACTGATCTGCCACGAAGCCTCTGCCCTCAAGGGTCTCTTTGGTGAGATCCATGAAGCCAAGGATGAGCTTGAGAGTATGCAGGCTTACTTGAAAACAGCAGAGCGGTTCAAGGACACTGATGAGACCACCGGCCTCTTCGTCGACAGAATCAGGGGCTTCGCTTTTGAGATCGAGGATGTTGTTGATGAGTTCACCTACAAGCTGGAGGACAAGCACGGAGGGTTTGTTTCCAAGATGAAGAAGAGGATCAAGTATGCCAGTACCTGGCGCCGGCTTGCGCACAAGCTGAATGATATCAAGGGCAGGCTTCAAGGGGCTAAGCAGCGGAACCAGGACTACACCATGAAACAAACGGATAGAAATGCTGGAGGCATTGCTTTTCATGCCAATCAAGCTTTGAATTTCACAAGGGATGAGGACCTTGTGGGGATTACCGAGCACAAGAAGCAACTGGTTCAATGGCTAGCAGGTGATTTAGAACAGAGATGCAAAATATTCGCTGTTTGGGGCATGCCTGGTGTGGGGAAAACAACTTTGGTTGCTCATGTGTACAAGACCATCAAAATGGACTTTGATGCTGCTGCATGGGTAACCGTGTCACAGAGTTATGATGTTCAAGAGGTGTTGAAGAAAATTGCTGGAGAGTTTGGCATCACAGCTGATGGTGCCAACATGGAAATGGAAAGACTAGCTCCGACCATCTATGAGTACCTAAAAGGTAAAAGGTACATCTTAGTTCTGGATGACATTTGGACTGCAGATGTCTGGTCAGAGATAAGGACTGTTTTCCCATCTAATTGTATTGGTCGATTTGTTATCACATCAAGAAAGCATGAAGTATCATTATTAGGAACCAGTAATTCAGCTATTCACTTGGAACCACTTGGCAAAGATGACTCTTGGGAGTTATTCTGCAAATCAGCCTTTTGGAACGATGGTGACAGAAAGTGCCCATTGCACTTGAAGGTTTTGGCTTTGAAATTTGTCGACAAGTGTGAAGGGTTGCCTATTGCTATTGCATGCATCGGCAGCCAACTATCTGCGAAAGGACAAACTTCTGCCGAATGGGAAAAAGCATATGATGAGTTAGAGCTGCAGTTGGTTAAAAATGTGATGCCTCGTGTTGAGACTATTCTTAAAGTCAGCTTGGAGGACCTTCCATGTGATTTGAAAAATTGTTTCTTACACTGTGCATTATTCCCAGAAGATTATCCCATCAAGAGGAGGACAGTAATGAGGCACTGGATTAGTAGTGGGTTCATCAAGAAGAAGGGGAACCAAACTTTGGAGGAAGTGGCGGAGGAGTACTTGACTGAGCTTGTGAACCGAAGCCTATTACAGGTAGTGAAGAGGAATTATACTGGGCGGTTGAAATGTTGTCAAATGCATGATGTAATACGGCTTGTTGCGCTCAAAAAAGCAGAGAAAGAATGCTTTGGTAAAGTGTATGATGGCTCTGGGGAATTTTCTGGAGGGCCCACACGTCGTATATCAATCCAGAGTAGAAACCTTGACCGAATTAGTCCATCAAATGCATCACATATCCGTTCACTTCATGTTTTTGAGAGGTATATCGATATTGATTTGCTGAGGCCCATCCTAACATCTTCGAATTTGCTGTCAACGTTGGATCTGAAAGGTGCTTGTATCAAGATGTTGCCTACTGAGGTATTCAACTTGTTTCATCTGCGGTATTTGGGCCTTAGATCTACTGCTATTGAAAGTCTACCTGAAACAATAGGAAGGTTGCAAAACTTGGAAGTGTTGGATGCTTGTAATGCTCCGTTGTTGTATTTGCCAAATAACATTGTAAAACTTCAGAAGTTGAGATACCTTTATGCATGTAATGTTTATCGTGAAGGTGAAGATATTCGCCGTCGCAGTGGTGTAAAGGTGCCTAGTGGCATAAGGCACTTGATGTCACTGCAAGCTTTGCAATGTGTGGAGGCAAGTCCAGAAATTCTGCGTGAGGTTGGATATTTGACAGAGCTAAGAACATTCAGTGTCTGCAATGTGAGAAGTGAACACTCTGGTAACTTAAGAGATGCTGTCAACAAAATGAGTCATCTTGTTCATCTAGAAATTATAACTCTAGGGGAGAAGGAAGTGCTGCATCTAGAGGGACTTTGTTTACCTCCAACCTTTTCTTGGCTTTGTTTACAAGGACAGCTGGAGAGAAAATCAATACCGAAGGTTCTGTCATCTTGGTCTCGCCTCAGTAGTCTCACAAAGTTGGAGATGGAATTCTGCAGAATTGATGAGGAGTCGTTTCCCAGTTTGTTGGTGCTACGTGGTTTATGTCTCCTTAGCCTTACCAAGGCTTTTGATGGGAAGAAGCTGCACTTCACTGCAGGGTGTTTCCCAAGACTTCAAGTTCTATATATATGGCACGCACCACAGCTCAATCAAGTTCAAATAGAACAGGGTGCGATGTCAAACCTTGCTGAGCTCAACTTTGGTGACTGTCCTATGTTGAAGTATCTTCCTCAAGGTATTGAACACCTTAAAAACCTTGTGCAGTTATTACTGAAGGATACATCAGAAGAGCTCGTAGAGAGGCTTTGGCGGAAGGGAGGACCAGATGAATGCAAGGACGATAGTATGGACATTAGCCACATCAGAAAGGTTTTTGTTCTTATGGGCACCCGGGGATGGATAATGTGA
Protein sequences
Name | Description | Sequence |
---|---|---|
Si025947m | NB-ARC domain-containing disease resistance protein (best arabidopsis hit); disease resistance protein RPM1, putative (best rice hit) | MAEAVVGLLIGKLGAALVKEAASSGASLICHEASALKGLFGEIHEAKDELESMQAYLKTAERFKDTDETTGLFVDRIRGFAFEIEDVVDEFTYKLEDKHGGFVSKMKKRIKYASTWRRLAHKLNDIKGRLQGAKQRNQDYTMKQTDRNAGGIAFHANQALNFTRDEDLVGITEHKKQLVQWLAGDLEQRCKIFAVWGMPGVGKTTLVAHVYKTIKMDFDAAAWVTVSQSYDVQEVLKKIAGEFGITADGANMEMERLAPTIYEYLKGKRYILVLDDIWTADVWSEIRTVFPSNCIGRFVITSRKHEVSLLGTSNSAIHLEPLGKDDSWELFCKSAFWNDGDRKCPLHLKVLALKFVDKCEGLPIAIACIGSQLSAKGQTSAEWEKAYDELELQLVKNVMPRVETILKVSLEDLPCDLKNCFLHCALFPEDYPIKRRTVMRHWISSGFIKKKGNQTLEEVAEEYLTELVNRSLLQVVKRNYTGRLKCCQMHDVIRLVALKKAEKECFGKVYDGSGEFSGGPTRRISIQSRNLDRISPSNASHIRSLHVFERYIDIDLLRPILTSSNLLSTLDLKGACIKMLPTEVFNLFHLRYLGLRSTAIESLPETIGRLQNLEVLDACNAPLLYLPNNIVKLQKLRYLYACNVYREGEDIRRRSGVKVPSGIRHLMSLQALQCVEASPEILREVGYLTELRTFSVCNVRSEHSGNLRDAVNKMSHLVHLEIITLGEKEVLHLEGLCLPPTFSWLCLQGQLERKSIPKVLSSWSRLSSLTKLEMEFCRIDEESFPSLLVLRGLCLLSLTKAFDGKKLHFTAGCFPRLQVLYIWHAPQLNQVQIEQGAMSNLAELNFGDCPMLKYLPQGIEHLKNLVQLLLKDTSEELVERLWRKGGPDECKDDSMDISHIRKVFVLMGTRGWIM* |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPanther: PTHR23155 | 14-913 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | GAALVKEAASSGASLICHEASALKGLFGEIHEAKDELESMQAYLKTAERFKDTDETTGLFVDRIRGFAFEIEDVVDEFTYKLEDKHGGFVSKMKKRIKYASTWRRLAHKLNDIKGRLQGAKQRNQDYTMKQTDRNAGGIAFHANQALNFTRDEDLVGITEHKKQLVQWLAGDLEQRCKIFAVWGMPGVGKTTLVAHVYKTIKMDFDAAAWVTVSQSYDVQEVLKKIAGEFGITADGANMEMERLAPTIYEYLKGKRYILVLDDIWTADVWSEIRTVFPSNCIGRFVITSRKHEVSLLGTSNSAIHLEPLGKDDSWELFCKSAFWNDGDRKCPLHLKVLALKFVDKCEGLPIAIACIGSQLSAKGQTSAEWEKAYDELELQLVKNVMPRVETILKVSLEDLPCDLKNCFLHCALFPEDYPIKRRTVMRHWISSGFIKKKGNQTLEEVAEEYLTELVNRSLLQVVKRNYTGRLKCCQMHDVIRLVALKKAEKECFGKVYDGSGEFSGGPTRRISIQSRNLDRISPSNASHIRSLHVFERYIDIDLLRPILTSSNLLSTLDLKGACIKMLPTEVFNLFHLRYLGLRSTAIESLPETIGRLQNLEVLDACNAPLLYLPNNIVKLQKLRYLYACNVYREGEDIRRRSGVKVPSGIRHLMSLQALQCVEASPEILREVGYLTELRTFSVCNVRSEHSGNLRDAVNKMSHLVHLEIITLGEKEVLHLEGLCLPPTFSWLCLQGQLERKSIPKVLSSWSRLSSLTKLEMEFCRIDEESFPSLLVLRGLCLLSLTKAFDGKKLHFTAGCFPRLQVLYIWHAPQLNQVQIEQGAMSNLAELNFGDCPMLKYLPQGIEHLKNLVQLLLKDTSEELVERLWRKGGPDECKDDSMDISHIRKVFVLMGTRGWI |
HMMPanther: PTHR23155:SF125 | 14-913 | PUTATIVE RPR1 (PUTATIVE UNCHARACTERIZED PROTEIN) (OS01G0547000 PROTEIN),PUTATIVE RPR1 (PUTATIVE UNCHARACTERIZED PROTEIN) (OS01G0547000 PROTEIN) | GAALVKEAASSGASLICHEASALKGLFGEIHEAKDELESMQAYLKTAERFKDTDETTGLFVDRIRGFAFEIEDVVDEFTYKLEDKHGGFVSKMKKRIKYASTWRRLAHKLNDIKGRLQGAKQRNQDYTMKQTDRNAGGIAFHANQALNFTRDEDLVGITEHKKQLVQWLAGDLEQRCKIFAVWGMPGVGKTTLVAHVYKTIKMDFDAAAWVTVSQSYDVQEVLKKIAGEFGITADGANMEMERLAPTIYEYLKGKRYILVLDDIWTADVWSEIRTVFPSNCIGRFVITSRKHEVSLLGTSNSAIHLEPLGKDDSWELFCKSAFWNDGDRKCPLHLKVLALKFVDKCEGLPIAIACIGSQLSAKGQTSAEWEKAYDELELQLVKNVMPRVETILKVSLEDLPCDLKNCFLHCALFPEDYPIKRRTVMRHWISSGFIKKKGNQTLEEVAEEYLTELVNRSLLQVVKRNYTGRLKCCQMHDVIRLVALKKAEKECFGKVYDGSGEFSGGPTRRISIQSRNLDRISPSNASHIRSLHVFERYIDIDLLRPILTSSNLLSTLDLKGACIKMLPTEVFNLFHLRYLGLRSTAIESLPETIGRLQNLEVLDACNAPLLYLPNNIVKLQKLRYLYACNVYREGEDIRRRSGVKVPSGIRHLMSLQALQCVEASPEILREVGYLTELRTFSVCNVRSEHSGNLRDAVNKMSHLVHLEIITLGEKEVLHLEGLCLPPTFSWLCLQGQLERKSIPKVLSSWSRLSSLTKLEMEFCRIDEESFPSLLVLRGLCLLSLTKAFDGKKLHFTAGCFPRLQVLYIWHAPQLNQVQIEQGAMSNLAELNFGDCPMLKYLPQGIEHLKNLVQLLLKDTSEELVERLWRKGGPDECKDDSMDISHIRKVFVLMGTRGWI |
Coil: coil | 123-144 | coiled-coil | LNDIKGRLQGAKQRNQDYTMKQ |
superfamily: SSF52540 | 151-398 | P-loop containing nucleoside triphosphate hydrolases | GIAFHANQALNFTRDEDLVGITEHKKQLVQWLAGDLEQRCKIFAVWGMPGVGKTTLVAHVYKTIKMDFDAAAWVTVSQSYDVQEVLKKIAGEFGITADGANMEMERLAPTIYEYLKGKRYILVLDDIWTADVWSEIRTVFPSNCIGRFVITSRKHEVSLLGTSNSAIHLEPLGKDDSWELFCKSAFWNDGDRKCPLHLKVLALKFVDKCEGLPIAIACIGSQLSAKGQTSAEWEKAYDELELQLVKNV |
Gene3D: G3DSA:3.40.50.300 | 170-290 | no description | GITEHKKQLVQWLAGDLEQRCKIFAVWGMPGVGKTTLVAHVYKTIKMDFDAAAWVTVSQSYDVQEVLKKIAGEFGITADGANMEMERLAPTIYEYLKGKRYILVLDDIWTADVWSEIRTVF |
HMMPfam: PF00931 IPR002182
|
172-450 | NB-ARC,NBS NB-ARC
|
TEHKKQLVQWLAGDLEQRCKIFAVWGMPGVGKTTLVAHVYKTIKMDFDAAAWVTVSQSYDVQEVLKKIAGEFGITADGANMEMERLAPTIYEYLKGKRYILVLDDIWTADVWSEIRTVFPSNCIGRFVITSRKHEVSLLGTSNSAIHLEPLGKDDSWELFCKSAFWNDGDRKCPLHLKVLALKFVDKCEGLPIAIACIGSQLSAKGQTSAEWEKAYDELELQLVKNVMPRVETILKVSLEDLPCDLKNCFLHCALFPEDYPIKRRTVMRHWISSGFIKK |
FPrintScan: PR00364 IPR000767
|
192-207 | DISEASERSIST Disease resistance protein
|
IFAVWGMPGVGKTTLV |
FPrintScan: PR00364 IPR000767
|
264-278 | DISEASERSIST Disease resistance protein
|
YLKGKRYILVLDDIW |
FPrintScan: PR00364 IPR000767
|
359-373 | DISEASERSIST Disease resistance protein
|
CEGLPIAIACIGSQL |
superfamily: SSF52058 | 488-872 | L domain-like,LRR | QMHDVIRLVALKKAEKECFGKVYDGSGEFSGGPTRRISIQSRNLDRISPSNASHIRSLHVFERYIDIDLLRPILTSSNLLSTLDLKGACIKMLPTEVFNLFHLRYLGLRSTAIESLPETIGRLQNLEVLDACNAPLLYLPNNIVKLQKLRYLYACNVYREGEDIRRRSGVKVPSGIRHLMSLQALQCVEASPEILREVGYLTELRTFSVCNVRSEHSGNLRDAVNKMSHLVHLEIITLGEKEVLHLEGLCLPPTFSWLCLQGQLERKSIPKVLSSWSRLSSLTKLEMEFCRIDEESFPSLLVLRGLCLLSLTKAFDGKKLHFTAGCFPRLQVLYIWHAPQLNQVQIEQGAMSNLAELNFGDCPMLKYLPQGIEHLKNLVQLLLKD |
Gene3D: G3DSA:3.80.10.10 | 538-668 | no description | NASHIRSLHVFERYIDIDLLRPILTSSNLLSTLDLKGACIKMLPTEVFNLFHLRYLGLRSTAIESLPETIGRLQNLEVLDACNAPLLYLPNNIVKLQKLRYLYACNVYREGEDIRRRSGVKVPSGIRHLMS |
Seg: seg | 561-572 | seg | LTSSNLLSTLDL |
FPrintScan: PR00364 IPR000767
|
608-624 | DISEASERSIST Disease resistance protein
|
GRLQNLEVLDACNAPLL |
Gene3D: G3DSA:3.80.10.10 | 669-873 | no description | LQALQCVEASPEILREVGYLTELRTFSVCNVRSEHSGNLRDAVNKMSHLVHLEIITLGEKEVLHLEGLCLPPTFSWLCLQGQLERKSIPKVLSSWSRLSSLTKLEMEFCRIDEESFPSLLVLRGLCLLSLTKAFDGKKLHFTAGCFPRLQVLYIWHAPQLNQVQIEQGAMSNLAELNFGDCPMLKYLPQGIEHLKNLVQLLLKDT |
Seg: seg | 787-798 | seg | LLVLRGLCLLSL |
List of Contributions
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