PRGDB00186567 ()

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Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank
Gene Class CNL
Domain Type NBS, LRR, Others
Gene Species Arabidopsis thaliana

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DNA Sequence


Protein sequences

Name Description Sequence
Probable disease resistance protein RDL5/RF45 RecName: Full=Probable disease resistance protein RDL5/RF45.

MAGELISFGIQNLWNLLSQECELFQGVEDQVTELKRDLNMLSSFLKDANAKKHTSAVVKNCVEEIKEIIYDGEDTIETFVLEQNLGKTSGIKKSIRRLACIIPDRRRYALGIGGLSNRISKVIRDMQSFGVQQAIVDGGYKQPQGDKQREMRQKFSKDDDSDFVGLEANVKKLVGYLVDEANVQVVSITGMGGLGKTTLAKQVFNHEDVKHQFDGLSWVCVSQDFTRMNVWQKILRDLKPKEEEKKIMEMTQDTLQGELIRLLETSKSLIVLDDIWEKEDWELIKPIFPPTKGWKVLLTSRNESVAMRRNTSYINFKPECLTTEDSWTLFQRIALPMKDAAEFKIDEEKEELGKLMIKHCGGLPLAIRVLGGMLAEKYTSHDWRRLSENIGSHLVGGRTNFNDDNNNTCNNVLSLSFEELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVYIEELVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRPSTANLQSTVTSRRFVYQYPTTLHVEKDINNPKLRALVVVTLGSWNLAGSSFTRLELLRVLDLIEVKIKGGKLASCIGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNLASFGRSTFVPNVLMGMQELRYLALPSDMGRKTKLELSNLVKLETLENFSTENSSLEDLCGMVRLSTLNIKLIEETSLETLAASIGGLKYLEKLEIYDHGSEMRTKEAGIVFDFVHLKRLWLKLYMPRLSTEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCSSGGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQIHCRL

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF241
2-855 DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS), PUTATIVE / PRM1 HOMOLOG, PUTATIV,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

AGELISFGIQNLWNLLSQECELFQGVEDQVTELKRDLNMLSSFLKDANAKKHTSAVVKNCVEEIKEIIYDGEDTIETFVLEQNLGKTSGIKKSIRRLACIIPDRRRYALGIGGLSNRISKVIRDMQSFGVQQAIVDGGYKQPQGDKQREMRQKFSKDDDSDFVGLEANVKKLVGYLVDEANVQVVSITGMGGLGKTTLAKQVFNHEDVKHQFDGLSWVCVSQDFTRMNVWQKILRDLKPKEEEKKIMEMTQDTLQGELIRLLETSKSLIVLDDIWEKEDWELIKPIFPPTKGWKVLLTSRNESVAMRRNTSYINFKPECLTTEDSWTLFQRIALPMKDAAEFKIDEEKEELGKLMIKHCGGLPLAIRVLGGMLAEKYTSHDWRRLSENIGSHLVGGRTNFNDDNNNTCNNVLSLSFEELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVYIEELVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRPSTANLQSTVTSRRFVYQYPTTLHVEKDINNPKLRALVVVTLGSWNLAGSSFTRLELLRVLDLIEVKIKGGKLASCIGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNLASFGRSTFVPNVLMGMQELRYLALPSDMGRKTKLELSNLVKLETLENFSTENSSLEDLCGMVRLSTLNIKLIEETSLETLAASIGGLKYLEKLEIYDHGSEMRTKEAGIVFDFVHLKRLWLKLYMPRLSTEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCSSGGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQIHCRL

HMMPanther: PTHR23155
2-855 FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

AGELISFGIQNLWNLLSQECELFQGVEDQVTELKRDLNMLSSFLKDANAKKHTSAVVKNCVEEIKEIIYDGEDTIETFVLEQNLGKTSGIKKSIRRLACIIPDRRRYALGIGGLSNRISKVIRDMQSFGVQQAIVDGGYKQPQGDKQREMRQKFSKDDDSDFVGLEANVKKLVGYLVDEANVQVVSITGMGGLGKTTLAKQVFNHEDVKHQFDGLSWVCVSQDFTRMNVWQKILRDLKPKEEEKKIMEMTQDTLQGELIRLLETSKSLIVLDDIWEKEDWELIKPIFPPTKGWKVLLTSRNESVAMRRNTSYINFKPECLTTEDSWTLFQRIALPMKDAAEFKIDEEKEELGKLMIKHCGGLPLAIRVLGGMLAEKYTSHDWRRLSENIGSHLVGGRTNFNDDNNNTCNNVLSLSFEELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVYIEELVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRPSTANLQSTVTSRRFVYQYPTTLHVEKDINNPKLRALVVVTLGSWNLAGSSFTRLELLRVLDLIEVKIKGGKLASCIGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNLASFGRSTFVPNVLMGMQELRYLALPSDMGRKTKLELSNLVKLETLENFSTENSSLEDLCGMVRLSTLNIKLIEETSLETLAASIGGLKYLEKLEIYDHGSEMRTKEAGIVFDFVHLKRLWLKLYMPRLSTEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCSSGGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQIHCRL

superfamily: SSF52540
146-396 P-loop containing nucleoside triphosphate hydrolases

DKQREMRQKFSKDDDSDFVGLEANVKKLVGYLVDEANVQVVSITGMGGLGKTTLAKQVFNHEDVKHQFDGLSWVCVSQDFTRMNVWQKILRDLKPKEEEKKIMEMTQDTLQGELIRLLETSKSLIVLDDIWEKEDWELIKPIFPPTKGWKVLLTSRNESVAMRRNTSYINFKPECLTTEDSWTLFQRIALPMKDAAEFKIDEEKEELGKLMIKHCGGLPLAIRVLGGMLAEKYTSHDWRRLSENIGSHLVG

HMMPfam: PF00931
IPR002182
167-459 NB-ARC,NBS
NB-ARC

EANVKKLVGYLVDEANVQVVSITGMGGLGKTTLAKQVFNHEDVKHQFDGLSWVCVSQDFTRMNVWQKILRDLKPKEEEKKIMEMTQDTLQGELIRLLETSKSLIVLDDIWEKEDWELIKPIFPPTKGWKVLLTSRNESVAMRRNTSYINFKPECLTTEDSWTLFQRIALPMKDAAEFKIDEEKEELGKLMIKHCGGLPLAIRVLGGMLAEKYTSHDWRRLSENIGSHLVGGRTNFNDDNNNTCNNVLSLSFEELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEGIFQPRH

Gene3D: G3DSA:3.40.50.300
167-303 no description

EANVKKLVGYLVDEANVQVVSITGMGGLGKTTLAKQVFNHEDVKHQFDGLSWVCVSQDFTRMNVWQKILRDLKPKEEEKKIMEMTQDTLQGELIRLLETSKSLIVLDDIWEKEDWELIKPIFPPTKGWKVLLTSRNE

FPrintScan: PR00364
IPR000767
185-200 DISEASERSIST
Disease resistance protein

VVSITGMGGLGKTTLA

Seg: seg
239-250 seg

KPKEEEKKIMEM

FPrintScan: PR00364
IPR000767
262-276 DISEASERSIST
Disease resistance protein

LLETSKSLIVLDDIW

Coil: coil
338-359 coiled-coil

KDAAEFKIDEEKEELGKLMIKH

FPrintScan: PR00364
IPR000767
360-374 DISEASERSIST
Disease resistance protein

CGGLPLAIRVLGGML

Seg: seg
399-411 seg

TNFNDDNNNTCNN

superfamily: SSF52058
497-851 L domain-like,LRR

HLHDMMREVCLLKAKEENFLQITSSRPSTANLQSTVTSRRFVYQYPTTLHVEKDINNPKLRALVVVTLGSWNLAGSSFTRLELLRVLDLIEVKIKGGKLASCIGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNLASFGRSTFVPNVLMGMQELRYLALPSDMGRKTKLELSNLVKLETLENFSTENSSLEDLCGMVRLSTLNIKLIEETSLETLAASIGGLKYLEKLEIYDHGSEMRTKEAGIVFDFVHLKRLWLKLYMPRLSTEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCSSGGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQI

FPrintScan: PR00364
IPR000767
575-591 DISEASERSIST
Disease resistance protein

TRLELLRVLDLIEVKIK

Seg: seg
622-633 seg

LGNLKLLIYLNL

Gene3D: G3DSA:3.80.10.10
773-849 no description

TLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCSSGGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDI

Seg: seg
789-800 seg

LEKLLQLKELEL


List of References

A Kato, M Suzuki, A Kuwahara, H Ooe, K Higano-Inaba, Y Komeda
Isolation and analysis of cDNA within a 300 kb Arabidopsis thaliana genomic region located around the 100 map unit of chromosome 1.
Gene: 1999, 239(2);309-16
PubMed:10548732 WorldCat.org (P p)

A Theologis, J R Ecker, C J Palm, N A Federspiel, S Kaul, O White, J Alonso, H Altafi, R Araujo, C L Bowman, S Y Brooks, E Buehler, A Chan, Q Chao, H Chen, R F Cheuk, C W Chin, M K Chung, L Conn, A B Conway, A R Conway, T H Creasy, K Dewar, P Dunn, P Etgu, T V Feldblyum, J Feng, B Fong, C Y Fujii, J E Gill, A D Goldsmith, B Haas, N F Hansen, B Hughes, L Huizar, J L Hunter, J Jenkins, C Johnson-Hopson, S Khan, E Khaykin, C J Kim, H L Koo, I Kremenetskaia, D B Kurtz, A Kwan, B Lam, S Langin-Hooper, A Lee, J M Lee, C A Lenz, J H Li, Y Li, X Lin, S X Liu, Z A Liu, J S Luros, R Maiti, A Marziali, J Militscher, M Miranda, M Nguyen, W C Nierman, B I Osborne, G Pai, J Peterson, P K Pham, M Rizzo, T Rooney, D Rowley, H Sakano, S L Salzberg, J R Schwartz, P Shinn, A M Southwick, H Sun, L J Tallon, G Tambunga, M J Toriumi, C D Town, T Utterback, S Van Aken, M Vaysberg, V S Vysotskaia, M Walker, D Wu, G Yu, C M Fraser, J C Venter, R W Davis
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.
Nature: 2000, 408(6814);816-20
PubMed:11130712 WorldCat.org DOI (P p)

Rudy Maor, Alex Jones, Thomas S Nühse, David J Studholme, Scott C Peck, Ken Shirasu
Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants.
Mol. Cell Proteomics: 2007, 6(4);601-10
PubMed:17272265 WorldCat.org DOI (P p)





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Analyses

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