PRGDB00186650 ()

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Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 364285574 (HQ853195)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Solanum fernandezianum

Comment?

Solanum fernandezianum voucher CGN18243 disease resistance protein RGH2 gene, complete cds.

DNA Sequence

ATGGCTTATGCTGCTGTTACTTCCTTTATGAGAACCATACATCAATCAATGGAACTTACTGGATGTGATTTGCAACCGTTTTATGAAAAGCTCAAATCTTTGAGAGCTATTCTGGAGAAATCCTGCAATATAACGGGCGATCATGAGGAGTTAACAATCTTGGAAGTTGAAATCGTAGAGGTAGCATACACAACAGAAGATATGGTTGACTTGGAATCAAGAAGTGTTTTTTTAGCACAGAATTTGGAGGAAAGAAGCAGGGCTATGTGGGAAATTTTTTTCGTCTTGGAACAAGCACTAGAATGCATTGATTCCACCGTGAAACAGTGGATGGCAACATCGTACAGCATGAAAGATCTAAAACTACAAACTAGCTCACTTGTCAGTTTTCCTGAACATGCTTATGAGCAGCCCGAGAATATAATGGTTGGCCGTGAAAATGAATTTGAGATGATGCTGGATCAACTTGTTAGAGGAGGAAGGGAACTAGAAGTTGTCTCAATCGTAGGGATGGGAGGCATCGGGAAAACAACTTTGGCTGCAAAACTCTATAGTGATCCGTGCATTATGTCTCGATTTGATATTCGTGCAAAAGCAACTGTTTCACAAGAGTATTGTGTGAGAAATGTACTCCACGGCCTTCTTTCTTCGATAAGTGATGAACCTGATGATCAGCTAGCGGACCGACTGCAAAAGCATCTGAAAGGCAGGAGATACTTGGTAGTCATTGATGACATATGGACTACAGAAGGTTGGGATGATATAAAACTATGTTTCCCAGACTGTTATAATGGAAGCAGAATATTCCTGACTACTCGGAATGTGGAAGTGGCTGAATATGCTAGTTCAGGTAAGCCTCTTCATCACATGCGCCTCATGAATTTTGACGAAAGTTGGAATTTACTACACAAAAAGATCTTTGAAAAAGAAGGTTCTTATTCTCCTGAATTTGAAAATATTGGGAAACAAATTGCATTAAAATGTGGAGGATTACCTCTAGCAATTACTGTGATTGCTGGACTTCTCTCCAAAATGGGTCAAAGATTAGATGAGTGGCAAAGAATTGCGGAGAATGTAAGTTCGGCGGTAAGCACAGATCCTGAAGCACAATGCATAAGAGTGTTGGCTTTGAGTTACCATCACTTGCCTTCTCACCTAAAACCGTGTTTTCTATATTTTGCAGTTTTCGCAGAGGATGAACGGATTTATGTAAATAAAATTGTTGAGTTATGGGCTGTAGAGGGGTTTTTGAATGAAGAAGAGGGAAAAAGCATAGAAGAGGTGGCAACAACATGTATAAATGAACTTATAGATAGAAGCTTAATTTTCATCCACAATTTTAGTTTTCATGGAAGAATAGAAAGTTGTGGAATGCATGATGTGACCCGTGAACTCTGTTTGAGGGAAGCTCGAAACATGAATTTTGTGAATGTTATCAGAGGAAAGAGTGATCAAAATTCATGTGCACAATCCATGCAGTGTTCCTTTAAGAGTCGAAGTCGAATCAGTATCCATAATGAGGAAGAATTGGTTTGGTGTCGTAACAGTGAGGCTCATTCTATCATCACGTTCTATGATTTCAAATTCGTCACACTGGAATTGTCTTTCAAGCTAGTAAGAGTACTAGATCTTGGTTGGACTATATGCCCATTTTTTCCCTTTGGAGTACTTTCTCTAATTCATTTGAGATACCTATCTTTGTGTTTTAAACCTTGCTTACAGCAGTATCGAGGATCGAAAGAAGCTGTTCCCTCATCAATAATAGACATTCCTCTATCGATATCAAGCCTATGCTTTCTGCAAACTTTTAAACTTTACCTTCCATCTTACAGTGATCATCCTTTCATATTACCATCGGAAATTTTGACGATGCCACAATTGAGGACGCTGTGTATGGGCTGGAATTACTTGCGGAGTCATGAGCCTACAGAGAACAGATTGGTTTTGAAAAGTTTGCAATGCCTCAATCAATTGAATCCTCGGTATTGTACAGGGTCTTTTTTTAGACTATTTCCCAATTTAAAGAAGTTGAAAGTATTTGGCGTCCCAGAGGACTTTCGCAATCACAAGGACCTGTATGATTTTCGCTACTTATATCAGCTCGAGAAATTGGAATTTCAGACGGAAAGGGCAACTGCACCTCCAACTGATGTTCCAACTTTACTCTTACCTCCTCCGGATGCTTTTCCACAAAACCTTAAGAGTTTAACTTTTAGCGGAGATTTCAATTTGGCATGGAAGGATTTGAGCATTGTTGGTAAATTACCCAAACTCGAGGTCCTTAAACTATCAGGCCATGCCTTCATAGGCGAGGGGTGGGAAGTAGTTGAGGAAGGGTTTCCTCACTTGAAGTTCTTGTTTCTGGATGAAGTATACATTCGGTACTGGAGAGCTAGTAGTGATCACTTTCCGTACCTTGAACGACTTTTTCTTAGAGATTGCTATTTTTTGGATTCAATCCCTCGAGATTTTGCAGATATAACCACACTAGCTCTTACTGATATAAGTAGCTGTCGACAATCTGTTGTGAATTCCGCCAAGCAAATTCAACAGGACATTCAAGACAACTATGGAAGCTCTATCGAGGTCCATACTCGTGATACTCTCCAGCATATTCGATAG


Protein sequences

Name Description Sequence
disease resistance protein RGH2 disease resistance protein RGH2 [Solanum fernandezianum].

MAYAAVTSFMRTIHQSMELTGCDLQPFYEKLKSLRAILEKSCNITGDHEELTILEVEIVEVAYTTEDMVDLESRSVFLAQNLEERSRAMWEIFFVLEQALECIDSTVKQWMATSYSMKDLKLQTSSLVSFPEHAYEQPENIMVGRENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLAAKLYSDPCIMSRFDIRAKATVSQEYCVRNVLHGLLSSISDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEGWDDIKLCFPDCYNGSRIFLTTRNVEVAEYASSGKPLHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKMGQRLDEWQRIAENVSSAVSTDPEAQCIRVLALSYHHLPSHLKPCFLYFAVFAEDERIYVNKIVELWAVEGFLNEEEGKSIEEVATTCINELIDRSLIFIHNFSFHGRIESCGMHDVTRELCLREARNMNFVNVIRGKSDQNSCAQSMQCSFKSRSRISIHNEEELVWCRNSEAHSIITFYDFKFVTLELSFKLVRVLDLGWTICPFFPFGVLSLIHLRYLSLCFKPCLQQYRGSKEAVPSSIIDIPLSISSLCFLQTFKLYLPSYSDHPFILPSEILTMPQLRTLCMGWNYLRSHEPTENRLVLKSLQCLNQLNPRYCTGSFFRLFPNLKKLKVFGVPEDFRNHKDLYDFRYLYQLEKLEFQTERATAPPTDVPTLLLPPPDAFPQNLKSLTFSGDFNLAWKDLSIVGKLPKLEVLKLSGHAFIGEGWEVVEEGFPHLKFLFLDEVYIRYWRASSDHFPYLERLFLRDCYFLDSIPRDFADITTLALTDISSCRQSVVNSAKQIQQDIQDNYGSSIEVHTRDTLQHIR

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF129
1-480 OS06G0286500 PROTEIN

MAYAAVTSFMRTIHQSMELTGCDLQPFYEKLKSLRAILEKSCNITGDHEELTILEVEIVEVAYTTEDMVDLESRSVFLAQNLEERSRAMWEIFFVLEQALECIDSTVKQWMATSYSMKDLKLQTSSLVSFPEHAYEQPENIMVGRENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLAAKLYSDPCIMSRFDIRAKATVSQEYCVRNVLHGLLSSISDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEGWDDIKLCFPDCYNGSRIFLTTRNVEVAEYASSGKPLHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKMGQRLDEWQRIAENVSSAVSTDPEAQCIRVLALSYHHLPSHLKPCFLYFAVFAEDERIYVNKIVELWAVEGFLNEEEGKSIEEVATTCINELIDRSLIFIHNFSFHGRIESCGMHDVTRELCLREARNMNFVNVIR

HMMPanther: PTHR11017
1-480 FAMILY NOT NAMED,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MAYAAVTSFMRTIHQSMELTGCDLQPFYEKLKSLRAILEKSCNITGDHEELTILEVEIVEVAYTTEDMVDLESRSVFLAQNLEERSRAMWEIFFVLEQALECIDSTVKQWMATSYSMKDLKLQTSSLVSFPEHAYEQPENIMVGRENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLAAKLYSDPCIMSRFDIRAKATVSQEYCVRNVLHGLLSSISDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEGWDDIKLCFPDCYNGSRIFLTTRNVEVAEYASSGKPLHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKMGQRLDEWQRIAENVSSAVSTDPEAQCIRVLALSYHHLPSHLKPCFLYFAVFAEDERIYVNKIVELWAVEGFLNEEEGKSIEEVATTCINELIDRSLIFIHNFSFHGRIESCGMHDVTRELCLREARNMNFVNVIR

Seg: seg
49-61 seg

EELTILEVEIVEV

superfamily: SSF52540
125-366 P-loop containing nucleoside triphosphate hydrolases

SSLVSFPEHAYEQPENIMVGRENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLAAKLYSDPCIMSRFDIRAKATVSQEYCVRNVLHGLLSSISDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEGWDDIKLCFPDCYNGSRIFLTTRNVEVAEYASSGKPLHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKMGQRLDEWQRIAENVSSAVSTD

HMMPfam: PF00931
IPR002182
145-420 NB-ARC,NBS
NB-ARC

RENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLAAKLYSDPCIMSRFDIRAKATVSQEYCVRNVLHGLLSSISDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEGWDDIKLCFPDCYNGSRIFLTTRNVEVAEYASSGKPLHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKMGQRLDEWQRIAENVSSAVSTDPEAQCIRVLALSYHHLPSHLKPCFLYFAVFAEDERIYVNKIVELWAVEGFLNEE

Gene3D: G3DSA:3.40.50.300
154-257 no description

DQLVRGGRELEVVSIVGMGGIGKTTLAAKLYSDPCIMSRFDIRAKATVSQEYCVRNVLHGLLSSISDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEGWDDIKL

FPrintScan: PR00364
IPR000767
165-180 DISEASERSIST
Disease resistance protein

VVSIVGMGGIGKTTLA

FPrintScan: PR00364
IPR000767
233-247 DISEASERSIST
Disease resistance protein

HLKGRRYLVVIDDIW

FPrintScan: PR00364
IPR000767
328-342 DISEASERSIST
Disease resistance protein

CGGLPLAITVIAGLL

superfamily: SSF52058
457-844 L domain-like,LRR

GMHDVTRELCLREARNMNFVNVIRGKSDQNSCAQSMQCSFKSRSRISIHNEEELVWCRNSEAHSIITFYDFKFVTLELSFKLVRVLDLGWTICPFFPFGVLSLIHLRYLSLCFKPCLQQYRGSKEAVPSSIIDIPLSISSLCFLQTFKLYLPSYSDHPFILPSEILTMPQLRTLCMGWNYLRSHEPTENRLVLKSLQCLNQLNPRYCTGSFFRLFPNLKKLKVFGVPEDFRNHKDLYDFRYLYQLEKLEFQTERATAPPTDVPTLLLPPPDAFPQNLKSLTFSGDFNLAWKDLSIVGKLPKLEVLKLSGHAFIGEGWEVVEEGFPHLKFLFLDEVYIRYWRASSDHFPYLERLFLRDCYFLDSIPRDFADITTLALTDISSCRQSVVN

Seg: seg
584-597 seg

PSSIIDIPLSISSL

Seg: seg
711-728 seg

ATAPPTDVPTLLLPPPDA

Gene3D: G3DSA:3.80.10.10
726-848 no description

PDAFPQNLKSLTFSGDFNLAWKDLSIVGKLPKLEVLKLSGHAFIGEGWEVVEEGFPHLKFLFLDEVYIRYWRASSDHFPYLERLFLRDCYFLDSIPRDFADITTLALTDISSCRQSVVNSAKQ

FPrintScan: PR00364
IPR000767
753-769 DISEASERSIST
Disease resistance protein

GKLPKLEVLKLSGHAFI






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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