PRGDB00186651 ()

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Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 364285572 (HQ853194)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Solanum fernandezianum

Comment?

Solanum fernandezianum voucher CGN18243 disease resistance protein RGH1 gene, complete cds.

DNA Sequence

ATGGCTTATGCTGCTGTTACTTCCCTTATGAGAACCATACATCAATCAATGGAACTTACTGGATGTGATTCGCAACCGTTTTATGAAAAGCTCGAATCTTTGAGAGCTATTCTGGAGAAATCCTTCAATATAAAGGGCGATCATGAGGGGTTAACAATCTTGGAAGTTGAAATCATAGAGGTAGCATACACAACAGAAGATATGGTTGACTCGGAATCAAGAAATGTTTTTTTAGCACAGAATTTGGAGGAAAGAAGCAGGGCTATGTGGGAGATTTTTTTCGTCTTGGAACAAGCACTAGAATGCATTGGTTCCACCGTGAAACAGTGGATGGCAACATCAGACAGCATGAAAGATCTAAAACCACAAACTAGCTCACTTGTCAGTTTACCTGAACATGCTTTTGAGCAGCCCGAGAATATAATGGTTGGCCATGAAAATGAATTTGAGATGATGCTGGATCAACTTGTTAGAGGAGGAAGGGAACTAGAAGTTGTCTCAATCGTAGGGATGGGAGGCATCGGGAAAACAACTTTGGCTGCAAAACTCTATAGTGATCCGTGCATTATGTCTCGATTTGATATTCGTGCAAAAGCAACTGTTTCACAAGAGTATTATGTGAGAAATGTACTCCTAGCCCTTCTTTCTTCGACAAGTGATGAACCTGATGATCAGCTAGCGGACCGACTGCAAAAGCATCTGAAAGGCAGGAGATACTTGGTAGTCATTGATGACATATGGACTACAGAAGCTTGGGATGATATAAAACTATGTTTCCCAGACTGTATTAATGGAAGCAGAATACTCCTGACTACTCGGAATGTGGAATTGGCTGAATATGCTAGTTCAGGTAAGCCTCCTCATCACATGCGCCTCATGAATATTATCGAAAGTTGGAATTTACTACACAAAAAGATCTTTGAAAAAGAAGGTTCTTATTCTCCTGAATTTGAAAATATTGGGAAACAAATTGCATTAAAATGTGGAGGATTACCTCTAGCAATTACTGTGATTGCTGGACTTCTCTCCAAAATGGGTCAAAGATTAGATAAGTGGCAAAGAATTGCGGAGAATGTAAGTTCGGTGGTAAGCACAGATCCTGAAGCACAATGCATGAGAGTGTTGGCTTTGAGTTACCATCACTTGCCTTCTCACCTAAAACCGTGTTTTCTGTATTTTGCAATTTTCGCAGAGGATGAACGGATTTATGTAAAAAAACTTGTTGAGTTATGGGCCGTAGAGGGGTTTTTGAATGAAGAAGAGGGAAAAAGCATAGAAGAGGTGGCAGAAACATGTATAAACGAACTTGTAGATAGAAGTCTAATTTCTATCCACAGTTGGAGGTTTGATGTGGAAACACAGAGATGTGGAATGCATGATGTGACCCGTGAACTCTGTTTGAGGGAAGCTCGAAACATGAATTTTGTGAATGTTATCAGAGGAAAGAGTGATCAAAATTCATGTGCACAATCCATGCAGTGTTCCTTTAAGAGTCGAAGTCGGATCAGTATCTATAAGGAGGAAGAATTGGCTTGGTGTCGTAACAGTGAGGCTCATTCTATTATCATGTTGCGTATATTCAAATGCGTCACACTGGAATTGTCTTTCAAGCTAGTAAGAGTACTAGATCTTGGTTTGACTAGACGCCCAACTTTTCCCAGTGGAGTACTTTCTCTAATTCATTTGAGATACCTATCTTTGTGTTTTTATCCTTGCTTAAAGCAGTATCGAGGATCGAAAGAAGCTGTTCCCTCATCAATAATAGACATTCCTCTATCGATATCAAGCCTATGCTATCTGCAAACTTTTAAACTTTACCTTCCATTTCCCAATTATTATCCTTTCATATTACCATCAGAAATTTTGACGATGCCACAATTGAGGAAGCTGTGTATGGGCTGGAATTACTTGCAGAGTCATGAGCCTACAGAGAACAGATTGGTTTTGAAAAGTTTGCAATGCCTCAATCAATTGAATCCTCGGTATTGTACAGGGTCTTATTTTAGACTATTTCCCAATTTAAAGAAGTTGAAAGTATTTGGCGTCCCAGAGGACTTTCGCAATCACAAGGACATGTCTGGTTTTCGCTACTTATATCAGCTCGAGAAATTGACATTTGGTACTTATTATTCATCTGCTGCTTGCTTTCTAAAAAACGCTGCACCTTCAGGTTCTACTCCGCAAGATCCTCTGAGGTTTCAGACTCATTTCGGGGCAACTGCACCTCCAACTGATGTTCCAACTTTACTCTTACCTCCTCCGGATGCTTTTCCACAAAACCTTAAGAGTTCAACTTTTAGCGGAGAATTCTTTTTGGCATGGAAGGATTTGAGCATTGTTGGTAAATTACCCAAACTCGAGGTCCTTAAACTATCATGGAAAGCCTTCATAGGCGAGGAGTGGGAAGTAGTTGAGGAAGGGTTTCCTCACTTGAAGTTCTTGTTTCTGGATAGACTATACTTTCGGTACTGGAGAGCTAGTAGTGATCACTTTCCGTACCTTGAACGACTTTTTCTTAAAGATTGCTATATTTTGGATTCAATCCCTCGAGATTTTGCAAATGTAACCACACTAGCTCTTATTGATATAAGTCACTGTCAGCAATCTGTTGGGAATTCCGCCAAGCAAATTCAACAGGACATTCAAGACAACTATGGAAGCTCTATCGAGGTCCATACTCGTGGTCTTTTCTAG


Protein sequences

Name Description Sequence
disease resistance protein RGH1 disease resistance protein RGH1 [Solanum fernandezianum].

MAYAAVTSLMRTIHQSMELTGCDSQPFYEKLESLRAILEKSFNIKGDHEGLTILEVEIIEVAYTTEDMVDSESRNVFLAQNLEERSRAMWEIFFVLEQALECIGSTVKQWMATSDSMKDLKPQTSSLVSLPEHAFEQPENIMVGHENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLAAKLYSDPCIMSRFDIRAKATVSQEYYVRNVLLALLSSTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCINGSRILLTTRNVELAEYASSGKPPHHMRLMNIIESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKMGQRLDKWQRIAENVSSVVSTDPEAQCMRVLALSYHHLPSHLKPCFLYFAIFAEDERIYVKKLVELWAVEGFLNEEEGKSIEEVAETCINELVDRSLISIHSWRFDVETQRCGMHDVTRELCLREARNMNFVNVIRGKSDQNSCAQSMQCSFKSRSRISIYKEEELAWCRNSEAHSIIMLRIFKCVTLELSFKLVRVLDLGLTRRPTFPSGVLSLIHLRYLSLCFYPCLKQYRGSKEAVPSSIIDIPLSISSLCYLQTFKLYLPFPNYYPFILPSEILTMPQLRKLCMGWNYLQSHEPTENRLVLKSLQCLNQLNPRYCTGSYFRLFPNLKKLKVFGVPEDFRNHKDMSGFRYLYQLEKLTFGTYYSSAACFLKNAAPSGSTPQDPLRFQTHFGATAPPTDVPTLLLPPPDAFPQNLKSSTFSGEFFLAWKDLSIVGKLPKLEVLKLSWKAFIGEEWEVVEEGFPHLKFLFLDRLYFRYWRASSDHFPYLERLFLKDCYILDSIPRDFANVTTLALIDISHCQQSVGNSAKQIQQDIQDNYGSSIEVHTRGLF

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF129
1-480 OS06G0286500 PROTEIN

MAYAAVTSLMRTIHQSMELTGCDSQPFYEKLESLRAILEKSFNIKGDHEGLTILEVEIIEVAYTTEDMVDSESRNVFLAQNLEERSRAMWEIFFVLEQALECIGSTVKQWMATSDSMKDLKPQTSSLVSLPEHAFEQPENIMVGHENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLAAKLYSDPCIMSRFDIRAKATVSQEYYVRNVLLALLSSTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCINGSRILLTTRNVELAEYASSGKPPHHMRLMNIIESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKMGQRLDKWQRIAENVSSVVSTDPEAQCMRVLALSYHHLPSHLKPCFLYFAIFAEDERIYVKKLVELWAVEGFLNEEEGKSIEEVAETCINELVDRSLISIHSWRFDVETQRCGMHDVTRELCLREARNMNFVNVIR

HMMPanther: PTHR11017
1-480 FAMILY NOT NAMED,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MAYAAVTSLMRTIHQSMELTGCDSQPFYEKLESLRAILEKSFNIKGDHEGLTILEVEIIEVAYTTEDMVDSESRNVFLAQNLEERSRAMWEIFFVLEQALECIGSTVKQWMATSDSMKDLKPQTSSLVSLPEHAFEQPENIMVGHENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLAAKLYSDPCIMSRFDIRAKATVSQEYYVRNVLLALLSSTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCINGSRILLTTRNVELAEYASSGKPPHHMRLMNIIESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKMGQRLDKWQRIAENVSSVVSTDPEAQCMRVLALSYHHLPSHLKPCFLYFAIFAEDERIYVKKLVELWAVEGFLNEEEGKSIEEVAETCINELVDRSLISIHSWRFDVETQRCGMHDVTRELCLREARNMNFVNVIR

superfamily: SSF52540
117-366 P-loop containing nucleoside triphosphate hydrolases

MKDLKPQTSSLVSLPEHAFEQPENIMVGHENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLAAKLYSDPCIMSRFDIRAKATVSQEYYVRNVLLALLSSTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCINGSRILLTTRNVELAEYASSGKPPHHMRLMNIIESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKMGQRLDKWQRIAENVSSVVSTD

HMMPfam: PF00931
IPR002182
146-420 NB-ARC,NBS
NB-ARC

ENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLAAKLYSDPCIMSRFDIRAKATVSQEYYVRNVLLALLSSTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCINGSRILLTTRNVELAEYASSGKPPHHMRLMNIIESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKMGQRLDKWQRIAENVSSVVSTDPEAQCMRVLALSYHHLPSHLKPCFLYFAIFAEDERIYVKKLVELWAVEGFLNEE

Gene3D: G3DSA:3.40.50.300
154-279 no description

DQLVRGGRELEVVSIVGMGGIGKTTLAAKLYSDPCIMSRFDIRAKATVSQEYYVRNVLLALLSSTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCINGSRILLTTRNVELAE

FPrintScan: PR00364
IPR000767
165-180 DISEASERSIST
Disease resistance protein

VVSIVGMGGIGKTTLA

FPrintScan: PR00364
IPR000767
233-247 DISEASERSIST
Disease resistance protein

HLKGRRYLVVIDDIW

FPrintScan: PR00364
IPR000767
328-342 DISEASERSIST
Disease resistance protein

CGGLPLAITVIAGLL

superfamily: SSF52058
502-869 L domain-like,LRR

ISIYKEEELAWCRNSEAHSIIMLRIFKCVTLELSFKLVRVLDLGLTRRPTFPSGVLSLIHLRYLSLCFYPCLKQYRGSKEAVPSSIIDIPLSISSLCYLQTFKLYLPFPNYYPFILPSEILTMPQLRKLCMGWNYLQSHEPTENRLVLKSLQCLNQLNPRYCTGSYFRLFPNLKKLKVFGVPEDFRNHKDMSGFRYLYQLEKLTFGTYYSSAACFLKNAAPSGSTPQDPLRFQTHFGATAPPTDVPTLLLPPPDAFPQNLKSSTFSGEFFLAWKDLSIVGKLPKLEVLKLSWKAFIGEEWEVVEEGFPHLKFLFLDRLYFRYWRASSDHFPYLERLFLKDCYILDSIPRDFANVTTLALIDISHCQQS

Seg: seg
584-597 seg

PSSIIDIPLSISSL

Seg: seg
739-756 seg

ATAPPTDVPTLLLPPPDA

Gene3D: G3DSA:3.80.10.10
754-869 no description

PDAFPQNLKSSTFSGEFFLAWKDLSIVGKLPKLEVLKLSWKAFIGEEWEVVEEGFPHLKFLFLDRLYFRYWRASSDHFPYLERLFLKDCYILDSIPRDFANVTTLALIDISHCQQS

FPrintScan: PR00364
IPR000767
853-869 DISEASERSIST
Disease resistance protein

ANVTTLALIDISHCQQS






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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