PRGDB00186686 ()

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Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 363548167 (JN426988)
Gene Class NL
Domain Type NBS, LRR
Gene Species Curcuma zedoaria

Comment?

Curcuma zedoaria clone Czp31 NBS-LRR disease resistance protein gene, partial cds.

DNA Sequence

AGCGGCGGCGTGGGCAAAACCACCCTGGCGAAAATTGTGTATGATAAAACCGCGATTATTGGCGGCCATTTTCAGTATCCGGCGCGCATTGCGGTGAGCCAGAACTATAACATTAAAGAACTGCTGATTAAAATTATTCGCCAGATTAGCGTGAAAGAAGAACAGATTAGCCTGGGCTGCCAGGATAGCAGCCTGAACACCGAACAGCTGCTGAACATGATGGATGATAGCCAGCTGGTGCAGATTGTGCGCGGCCATCTGAACAAAAAACGCTATCTGCTGGTGTTTGATGATGTGTGGCGCACCGGCGCGTGGGAAAGCCTGAACATTGCGCTGCCGCCGGGCAAAGAAGGCAGCCGCGTGATTGTGACCACCCGCATTGAAGAAGTGGCGATTACCAGCTGCAGCCGCCATCAGTTTATTTTTAAAGTGAGCCCGCTGAGCAGCAGCCTGAGCTGGGAACTGTGCCGCCGCGTGTTTAAAGTGCCGGATTATAGCTGCCCGCCGGAACTGGAAGAATATCTGCGCCGCACCATTATTGTGCTGGGCCTGCCGCTGGCGGGC


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein, partial [Curcuma zedoaria].

SGGVGKTTLAKIVYDKTAIIGGHFQYPARIAVSQNYNIKELLIKIIRQISVKEEQISLGCQDSSLNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKEGSRVIVTTRIEEVAITSCSRHQFIFKVSPLSSSLSWELCRRVFKVPDYSCPPELEEYLRRTIIVLGLPLAG


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
2-187 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGVGKTTLAKIVYDKTAIIGGHFQYPARIAVSQNYNIKELLIKIIRQISVKEEQISLGCQDSSLNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKEGSRVIVTTRIEEVAITSCSRHQFIFKVSPLSSSLSWELCRRVFKVPDYSCPPELEEYLRRTIIVLGLPLA

superfamily: SSF52540
2-176 SSF52540

GGVGKTTLAKIVYDKTAIIGGHFQYPARIAVSQNYNIKELLIKIIRQISVKEEQISLGCQDSSLNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKEGSRVIVTTRIEEVAITSCSRHQFIFKVSPLSSSLSWELCRRVFKVPDYSCPPELEEYLR

HMMPfam: PF00931
IPR002182
2-187 NB-ARC,NBS
NB-ARC

GGVGKTTLAKIVYDKTAIIGGHFQYPARIAVSQNYNIKELLIKIIRQISVKEEQISLGCQDSSLNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKEGSRVIVTTRIEEVAITSCSRHQFIFKVSPLSSSLSWELCRRVFKVPDYSCPPELEEYLRRTIIVLGLPLA

HMMPanther: PTHR11017:SF126
2-187 PTHR11017:SF126,OS11G0237600 PROTEIN

GGVGKTTLAKIVYDKTAIIGGHFQYPARIAVSQNYNIKELLIKIIRQISVKEEQISLGCQDSSLNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKEGSRVIVTTRIEEVAITSCSRHQFIFKVSPLSSSLSWELCRRVFKVPDYSCPPELEEYLRRTIIVLGLPLA






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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