PRGDB00186687 ()

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Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 363548165 (JN426987)
Gene Class NL
Domain Type NBS, LRR
Gene Species Curcuma zedoaria

Comment?

Curcuma zedoaria clone Czp23 NBS-LRR disease resistance protein gene, partial cds.

DNA Sequence

GGCGGCGTGGGCAAAACCACCCTGGCGAAAATTGTGTATGATAAAACCGCGATTATTGGCGGCCATTTTCAGTATCCGGCGCGCATTGCGGTGAGCCAGAACTATAACATTAAAGAACTGCTGATTAAAATTATTCGCCAGATTAGCGTGAAAGAAGAACAGATTAGCCTGGGCTGCCAGGATAGCAGCCTGAACACCGAACAGCTGCTGAACATGATGGATGATAGCCAGCTGGTGCAGATTGTGCGCGGCCATCTGAACAAAAAACGCTATCTGCTGGTGTTTGATGATGTGTGGCGCACCGGCGCGTGGGAAAGCCTGAACATTGCGCTGCCGCCGGGCAAAGAAGGCAGCCGCGTGATTGTGACCACCCGCATTGAAGAAGTGGCGATTACCAGCTGCAGCCGCCATCAGTTTATTTTTAAAGTGAACCCGCTGAGCAGCCAGCTGAGCTGGGAACTGTGCCGCCGCGTGTTTAAAGTGCCGGATTATAGCTGCCCGCCGGAACTGGAAGAATATCTGCGCCGCACCATTATTGTGCTGGGCCTGCCGCTGGCGGGC


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein, partial [Curcuma zedoaria].

GGVGKTTLAKIVYDKTAIIGGHFQYPARIAVSQNYNIKELLIKIIRQISVKEEQISLGCQDSSLNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKEGSRVIVTTRIEEVAITSCSRHQFIFKVNPLSSQLSWELCRRVFKVPDYSCPPELEEYLRRTIIVLGLPLAG


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-186 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGVGKTTLAKIVYDKTAIIGGHFQYPARIAVSQNYNIKELLIKIIRQISVKEEQISLGCQDSSLNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKEGSRVIVTTRIEEVAITSCSRHQFIFKVNPLSSQLSWELCRRVFKVPDYSCPPELEEYLRRTIIVLGLPLA

superfamily: SSF52540
1-175 SSF52540

GGVGKTTLAKIVYDKTAIIGGHFQYPARIAVSQNYNIKELLIKIIRQISVKEEQISLGCQDSSLNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKEGSRVIVTTRIEEVAITSCSRHQFIFKVNPLSSQLSWELCRRVFKVPDYSCPPELEEYLR

HMMPanther: PTHR11017:SF126
1-186 PTHR11017:SF126,OS11G0237600 PROTEIN

GGVGKTTLAKIVYDKTAIIGGHFQYPARIAVSQNYNIKELLIKIIRQISVKEEQISLGCQDSSLNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKEGSRVIVTTRIEEVAITSCSRHQFIFKVNPLSSQLSWELCRRVFKVPDYSCPPELEEYLRRTIIVLGLPLA

HMMPfam: PF00931
IPR002182
1-186 NB-ARC,NBS
NB-ARC

GGVGKTTLAKIVYDKTAIIGGHFQYPARIAVSQNYNIKELLIKIIRQISVKEEQISLGCQDSSLNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKEGSRVIVTTRIEEVAITSCSRHQFIFKVNPLSSQLSWELCRRVFKVPDYSCPPELEEYLRRTIIVLGLPLA






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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