PRGDB00186697 ()

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Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 363548145 (JN426977)
Gene Class NL
Domain Type NBS, LRR
Gene Species Curcuma aromatica

Comment?

Curcuma aromatica clone Cap33 NBS-LRR disease resistance protein gene, partial cds.

DNA Sequence

AGCGGCGGCGTGGGCAAAACCACCCTGGCGCAGATTGTGTATGATAAAACCGCGATTATTGGCGGCCATTTTCAGTATCGCGCGTGGATTGCGGTGAGCCAGAACTATAACATTAAAGAACTGCTGAAAAAAATTATTCGCCAGATTAGCGTGAAAGAAGAACAGAACACCGAACAGCTGCTGAACATGATGGATGATAGCCAGCTGGTGCAGATTGTGCGCGGCCATCTGAACAAAAAACGCTATCTGCTGGTGTTTGATGATGTGTGGCGCACCGGCGCGTGGGAAAGCCTGAACATTGCGCTGCCGCCGGGCAAAGAAAGCCGCGTGATTGTGACCACCCGCATTGAAGAAGTGGCGATTCCGAGCTGCTATCGCCATCAGTTTATTTTTAAAGTGAGCCCGAGCAGCTATCAGCTGAGCTGGGAACTGCTGTGCCGCCGCGTGTTTAAAGTGCCGGATTATAGCTGCCCGCCGGAACTGGAAGAATATCTGCGCCGCACCATTATTGTGCTGGGCCTGCCGCTGGCG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein, partial [Curcuma aromatica].

SGGVGKTTLAQIVYDKTAIIGGHFQYRAWIAVSQNYNIKELLKKIIRQISVKEEQNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKESRVIVTTRIEEVAIPSCYRHQFIFKVSPSSYQLSWELLCRRVFKVPDYSCPPELEEYLRRTIIVLGLPLA


Domains

Domain Start-End Description Sequence

superfamily: SSF52540
2-166 SSF52540

GGVGKTTLAQIVYDKTAIIGGHFQYRAWIAVSQNYNIKELLKKIIRQISVKEEQNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKESRVIVTTRIEEVAIPSCYRHQFIFKVSPSSYQLSWELLCRRVFKVPDYSCPPELEEYLR

HMMPfam: PF00931
IPR002182
2-177 NB-ARC,NBS
NB-ARC

GGVGKTTLAQIVYDKTAIIGGHFQYRAWIAVSQNYNIKELLKKIIRQISVKEEQNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKESRVIVTTRIEEVAIPSCYRHQFIFKVSPSSYQLSWELLCRRVFKVPDYSCPPELEEYLRRTIIVLGLPLA

HMMPanther: PTHR23155
2-104 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGVGKTTLAQIVYDKTAIIGGHFQYRAWIAVSQNYNIKELLKKIIRQISVKEEQNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPP

HMMPanther: PTHR23155:SF121
2-104 PTHR23155:SF121,SUBFAMILY NOT NAMED

GGVGKTTLAQIVYDKTAIIGGHFQYRAWIAVSQNYNIKELLKKIIRQISVKEEQNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPP






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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