PRGDB00186701 ()

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Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 363548137 (JN426973)
Gene Class NL
Domain Type NBS, LRR
Gene Species Curcuma aromatica

Comment?

Curcuma aromatica clone Cap23 NBS-LRR disease resistance protein gene, partial cds.

DNA Sequence

GGCGGCGTGGGCAAAACCACCCTGGCGAAAATTGTGTATGATAAAACCGCGATTATTGGCGGCCATTTTCAGTATCGCGCGTGGATTGCGGTGAGCCAGAACTATAACATTAAAGAACTGCTGAAAAAAATTATTCGCCAGATTAGCGTGAAAGAAGAACAGAACACCGAACAGCTGCTGAACATGATGGATGATAGCCAGCTGGTGCAGATTGTGCGCGGCCATCTGAACAAAAAACGCTATCTGCTGGTGTTTGATGATGTGTGGCGCACCGGCGCGTGGGAAAGCCTGAACATTGCGCTGCCGCCGGGCAAAGAAGGCAGCCGCGTGATTGTGACCACCCGCATTGAAGAAGTGGGCATTCCGAGCTGCTATCGCCATCAGTTTATTTTTAAAGTGAGCCCGAGCAGCTATCAGCTGAGCTGGGAACTGCTGTGCCGCCGCGTGTTTAAAGTGCCGGATTATAGCTGCCCGCCGGAACTGGAAGAATATCTGCGCCGCACCATTATTGTGCTGGGCCTGCCGCTGGCGGCG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein, partial [Curcuma aromatica].

GGVGKTTLAKIVYDKTAIIGGHFQYRAWIAVSQNYNIKELLKKIIRQISVKEEQNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKEGSRVIVTTRIEEVGIPSCYRHQFIFKVSPSSYQLSWELLCRRVFKVPDYSCPPELEEYLRRTIIVLGLPLAA


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF20
1-177 PTHR11017:SF20,SUBFAMILY NOT NAMED

GGVGKTTLAKIVYDKTAIIGGHFQYRAWIAVSQNYNIKELLKKIIRQISVKEEQNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKEGSRVIVTTRIEEVGIPSCYRHQFIFKVSPSSYQLSWELLCRRVFKVPDYSCPPELEEYLRRTIIVLGLPLA

HMMPanther: PTHR11017
1-177 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGVGKTTLAKIVYDKTAIIGGHFQYRAWIAVSQNYNIKELLKKIIRQISVKEEQNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKEGSRVIVTTRIEEVGIPSCYRHQFIFKVSPSSYQLSWELLCRRVFKVPDYSCPPELEEYLRRTIIVLGLPLA

HMMPfam: PF00931
IPR002182
1-177 NB-ARC,NBS
NB-ARC

GGVGKTTLAKIVYDKTAIIGGHFQYRAWIAVSQNYNIKELLKKIIRQISVKEEQNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKEGSRVIVTTRIEEVGIPSCYRHQFIFKVSPSSYQLSWELLCRRVFKVPDYSCPPELEEYLRRTIIVLGLPLA

superfamily: SSF52540
1-166 SSF52540

GGVGKTTLAKIVYDKTAIIGGHFQYRAWIAVSQNYNIKELLKKIIRQISVKEEQNTEQLLNMMDDSQLVQIVRGHLNKKRYLLVFDDVWRTGAWESLNIALPPGKEGSRVIVTTRIEEVGIPSCYRHQFIFKVSPSSYQLSWELLCRRVFKVPDYSCPPELEEYLR






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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