PRGDB00188139 (At.74567)

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At.74567
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 56915741 (CB255116)
Gene Class TNL
Domain Type NBS, TIR, LRR
Gene Species Arabidopsis thaliana

Comment?

50-E018437-019-009-C13-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA clone MPIZp768C139Q 5-PRIME, mRNA sequence

DNA Sequence

CGACGTTTTCCCAAGCTTCAGTGGGGTAGATGTTCGCAAAACGGTCCTCAGCCATCTAATCGAGGCGCTCGACCGCAGATCAATCAATACATTCATGGATCACGGCATCGTGAGAAGCTGCATAATCTCCGATGAGCTTATAACGGCCATTAGAGAAGCGAGGATCTCAATAGTTATCTTCTCTGAGAACTATGCTTCTTCCACGTGGTGCTTGAATGAATTGGTGGAGATCCACAAGTGTCACAAGGACAGAGACTTGGATCAAATGGTGATTCCGGTTTTCTACGGCGTTGATCCTTCTCATGTTAGAAAACAGATCGGTGGCTTTGGCGATGTCTTTAAAAAGACATGCGAGGACGAACCAGAGGATCAGAAACAAAGATGGGTTAAAGCTCTCACAGATATATCAAATTTAGCCGGGGAGGATCTTCGGAACGGGCCTAGCGAAGCAGCCATGGTTGTAAAGATAGCTAATGATGTTTCGAATAAACTTTTTCCTCTGCCAAAGGGTTTTGGTGACTTACTCGGAATTGAGGATCATATAGAGGCTATAAAATTAAGACTGAGCTTGGAATCCAAAGAAGCTAGAATAATGGTCGGGATTCGGGGACAGTCAGGGATTGGTAAGAGTACAATAATATACCGCATATTAGAATATACCggatataaaaacatggatggaacactataatataccgcatatcac


Protein sequences

Name Description Sequence
At.74567 translated coding region predicted by ESTScan from UniGene At.74567

XDVFPSFSGVDVRKTVLSHLIEALDRRSINTFMDHGIVRSCIISDELITAIREARISIVIFSENYASSTWCLNELVEIHKCHKDRDLDQMVIPVFYGVDPSHVRKQIGGFGDVFKKTCEDEPEDQKQRWVKALTDISNLAGEDLRNGPSEAAMVVKIANDVSNKLFPLPKGFGDLLGIEDHIEAIKLRLSLESKEARIMVGIRGQSGIGKSTIIYRILEYTGYKNMDGTL

Domains

Domain Start-End Description Sequence

ProfileScan: PS50104
IPR000157
1-139 TIR
Toll/interleukin-1 receptor homology (TIR) domain

XDVFPSFSGVDVRKTVLSHLIEALDRRSINTFMDHGIVRSCIISDELITAIREARISIVIFSENYASSTWCLNELVEIHKCHKDRDLDQMVIPVFYGVDPSHVRKQIGGFGDVFKKTCEDEPEDQKQRWVKALTDISNL

HMMSmart: SM00255
IPR000157
2-139 Toll
Toll/interleukin-1 receptor homology (TIR) domain

DVFPSFSGVDVRKTVLSHLIEALDRRSINTFMDHGIVRSCIISDELITAIREARISIVIFSENYASSTWCLNELVEIHKCHKDRDLDQMVIPVFYGVDPSHVRKQIGGFGDVFKKTCEDEPEDQKQRWVKALTDISNL

Gene3D: G3DSA:3.40.50.10140
2-133 no description

DVFPSFSGVDVRKTVLSHLIEALDRRSINTFMDHGIVRSCIISDELITAIREARISIVIFSENYASSTWCLNELVEIHKCHKDRDLDQMVIPVFYGVDPSHVRKQIGGFGDVFKKTCEDEPEDQKQRWVKAL

superfamily: SSF52200
IPR000157
2-142 Toll/Interleukin receptor TIR domain
Toll/interleukin-1 receptor homology (TIR) domain

DVFPSFSGVDVRKTVLSHLIEALDRRSINTFMDHGIVRSCIISDELITAIREARISIVIFSENYASSTWCLNELVEIHKCHKDRDLDQMVIPVFYGVDPSHVRKQIGGFGDVFKKTCEDEPEDQKQRWVKALTDISNLAGE

HMMPfam: PF01582
IPR000157
3-134 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFPSFSGVDVRKTVLSHLIEALDRRSINTFMDHGIVRSCIISDELITAIREARISIVIFSENYASSTWCLNELVEIHKCHKDRDLDQMVIPVFYGVDPSHVRKQIGGFGDVFKKTCEDEPEDQKQRWVKALT

HMMPanther: PTHR23155:SF301
11-213 DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE

DVRKTVLSHLIEALDRRSINTFMDHGIVRSCIISDELITAIREARISIVIFSENYASSTWCLNELVEIHKCHKDRDLDQMVIPVFYGVDPSHVRKQIGGFGDVFKKTCEDEPEDQKQRWVKALTDISNLAGEDLRNGPSEAAMVVKIANDVSNKLFPLPKGFGDLLGIEDHIEAIKLRLSLESKEARIMVGIRGQSGIGKSTI

HMMPanther: PTHR23155
11-213 FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

DVRKTVLSHLIEALDRRSINTFMDHGIVRSCIISDELITAIREARISIVIFSENYASSTWCLNELVEIHKCHKDRDLDQMVIPVFYGVDPSHVRKQIGGFGDVFKKTCEDEPEDQKQRWVKALTDISNLAGEDLRNGPSEAAMVVKIANDVSNKLFPLPKGFGDLLGIEDHIEAIKLRLSLESKEARIMVGIRGQSGIGKSTI






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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