PRGDB00192113 (Mdo.10846)
| Mdo.10846 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 226741940 (GO497663) |
| Gene Class | T |
| Domain Type | TIR, LRR |
| Gene Species | Malus x domestica |
DNA Sequence
ATCGAATTCCGTTGCTGTCGAAGCTTCGAAGGGGAGAAGAAAAGGAACACCCACCGATCCCAGCCGCAGCTAGGATCGGCGGCACCAAATTTGAACACGATTGGGAATCACTCACACGAAACAGTGAGAATCACCCTCAAGCAGAGGGAAGGTCTCTCACAGGGAGCGTGCTGCTCATGGTTTATGCTCCCTATATGAGTGCAGATTGCTTGTGAAAATAATCTCATTTGTTCTGTTGTGAGAACCACATTTCCAATGGCATCAAGCACTTTGGGTTTGAATTCATCTCCTCCAGATGATAGGTTGAAATATGATGTATTTTTGAGTTTTCGAGGAGAAGACACGAGAAAGGGTTTTGTAAGTCATCTATATGAAGCGCTTGAGAACGCCGGCGTAAAAACTTTCCACGATGATGCTCCAAGAGATATTAGCCCAGAACTCAAGGCTGCAATTCAGAATTCGAGGACTGCAATTACTTTTCTGGGAGAGAATTATGCAACGTCGCCATGGGCATTGGAGGAGCTTGACCTGATTCTTAAATCCCATGGAAAAAGAAAAACGGTGCTACCAATTTTCTATAATGTCGATCCCTCTGACGTACGATATCAAACAGGGAGTTTTGCTGAAGCCTTTGCTAGACACGAAGAAACATAT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Mdo.10846 | translated coding region predicted by ESTScan from UniGene Mdo.10846 | XRIPLLSKLRRGEEKEHPPIPAAARIGGTKFEHDWESLTRNSENHPQAEGRSLTGSVLLMVYAPYMMQIACENNLICSVVRTTFPMASSTLGLNSSPPDDRLKYDVFLSFRGEDTRKGFVSHLYEALENAGVKTFHDDAPRDISPELKAAIQNSRTAITFLGENYATSPWALEELDLILKSHGKRKTVLPIFYNVDPSDVRYQTGSFAEAFARHEETY |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
92-214 | Toll/Interleukin receptor TIR domain Toll/interleukin-1 receptor homology (TIR) domain
|
GLNSSPPDDRLKYDVFLSFRGEDTRKGFVSHLYEALENAGVKTFHDDAPRDISPELKAAIQNSRTAITFLGENYATSPWALEELDLILKSHGKRKTVLPIFYNVDPSDVRYQTGSFAEAFARH |
| Gene3D: G3DSA:3.40.50.10140 | 99-215 | no description | DDRLKYDVFLSFRGEDTRKGFVSHLYEALENAGVKTFHDDAPRDISPELKAAIQNSRTAITFLGENYATSPWALEELDLILKSHGKRKTVLPIFYNVDPSDVRYQTGSFAEAFARHE |
| ProfileScan: PS50104 IPR000157
|
102-218 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
LKYDVFLSFRGEDTRKGFVSHLYEALENAGVKTFHDDAPRDISPELKAAIQNSRTAITFLGENYATSPWALEELDLILKSHGKRKTVLPIFYNVDPSDVRYQTGSFAEAFARHEETY |
| HMMSmart: SM00255 IPR000157
|
103-217 | Toll Toll/interleukin-1 receptor homology (TIR) domain
|
KYDVFLSFRGEDTRKGFVSHLYEALENAGVKTFHDDAPRDISPELKAAIQNSRTAITFLGENYATSPWALEELDLILKSHGKRKTVLPIFYNVDPSDVRYQTGSFAEAFARHEET |
| HMMPfam: PF01582 IPR000157
|
106-216 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VFLSFRGEDTRKGFVSHLYEALENAGVKTFHDDAPRDISPELKAAIQNSRTAITFLGENYATSPWALEELDLILKSHGKRKTVLPIFYNVDPSDVRYQTGSFAEAFARHEE |
| HMMPanther: PTHR23155 | 111-207 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | RGEDTRKGFVSHLYEALENAGVKTFHDDAPRDISPELKAAIQNSRTAITFLGENYATSPWALEELDLILKSHGKRKTVLPIFYNVDPSDVRYQTGSF |
| HMMPanther: PTHR23155:SF344 | 111-207 | SUBFAMILY NOT NAMED | RGEDTRKGFVSHLYEALENAGVKTFHDDAPRDISPELKAAIQNSRTAITFLGENYATSPWALEELDLILKSHGKRKTVLPIFYNVDPSDVRYQTGSF |
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