PRGDB00193910 (Aan.75898)

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Aan.75898
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 159620436 (EY085313)
Gene Class Unknown
Domain Type
Gene Species Artemisia annua

Comment?

CAZI16805.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI16805 5', mRNA sequence

DNA Sequence

CGAAATTGTCCACAGTCACACTACTCAAAGTTCAGTGCAGCAACTGACATTTGTTCAAAAATCAACAACTCACATAAAATAGTTTCAGAAAAACATGAGTGGTGAAGGCAAGGTAGTTTGTGTGACAGGTGCATCAGGGTTCATAGCTTCATGGATTGTTAAACTCTTGCTTGATCGTGGCTACTCTGTTCATGCAACTGTTCGATCACTCGCCGATCCTAAAAAGACAGAACATCTAGTTGCTCTTGATGGAGCAAAAGAAAGGCTGACGTTGTTTGAGGCTACCTTAACTGAAGAAGGATCTTTCGATGCTGCAATTGATGGCTGTGTATGCGTCTTTCACACGGCATCTCCTGTTCTACTTTCAGTTGATGACCCACACGCACAACTCGTAGATCCTGCAGTTAAGGGGACGCTCAGTGTTCTTAAGTCAGCTGCAAAAGTTCCGTCTCTCAAAAGAGTGGTCTTGACATCTTCCATGGCTGCAGTTGTGTTCGGTGCAAAACTTCCTGAGCCTAGTGATGTGGTAGACGAGACGTGGTTCTCAGATCCAGTACTTTGTGAGCAGAAAAAGTTGTGGTATATGCTTTCAAAGACTTTAGCAGAGGATGCTGCCGTAAAGTTTTCAAGAGAGAACGGTTTGGAATTGGTAGCTATAAATCCTGGATATGTGATTGGCCCTATCTTACAGCCAACTCTAAATATGACTTCTGAGGGGTTCATGAGAATGATAGAAACCGGC


Protein sequences

Name Description Sequence
Aan.75898 translated coding region predicted by ESTScan from UniGene Aan.75898

MSGEGKVVCVTGASGFIASWIVKLLLDRGYSVHATVRSLADPKKTEHLVALDGAKERLTLFEATLTEEGSFDAAIDGCVCVFHTASPVLLSVDDPHAQLVDPAVKGTLSVLKSAAKVPSLKRVVLTSSMAAVVFGAKLPEPSDVVDETWFSDPVLCEQKKLWYMLSKTLAEDAAVKFSRENGLELVAINPGYVIGPILQPTLNMTSEGFMRMIETG

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR10366:SF9
1-214 CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE

MSGEGKVVCVTGASGFIASWIVKLLLDRGYSVHATVRSLADPKKTEHLVALDGAKERLTLFEATLTEEGSFDAAIDGCVCVFHTASPVLLSVDDPHAQLVDPAVKGTLSVLKSAAKVPSLKRVVLTSSMAAVVFGAKLPEPSDVVDETWFSDPVLCEQKKLWYMLSKTLAEDAAVKFSRENGLELVAINPGYVIGPILQPTLNMTSEGFMRMIE

HMMPanther: PTHR10366
1-214 FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE

MSGEGKVVCVTGASGFIASWIVKLLLDRGYSVHATVRSLADPKKTEHLVALDGAKERLTLFEATLTEEGSFDAAIDGCVCVFHTASPVLLSVDDPHAQLVDPAVKGTLSVLKSAAKVPSLKRVVLTSSMAAVVFGAKLPEPSDVVDETWFSDPVLCEQKKLWYMLSKTLAEDAAVKFSRENGLELVAINPGYVIGPILQPTLNMTSEGFMRMIE

superfamily: SSF51735
1-214 NAD(P)-binding Rossmann-fold domains

MSGEGKVVCVTGASGFIASWIVKLLLDRGYSVHATVRSLADPKKTEHLVALDGAKERLTLFEATLTEEGSFDAAIDGCVCVFHTASPVLLSVDDPHAQLVDPAVKGTLSVLKSAAKVPSLKRVVLTSSMAAVVFGAKLPEPSDVVDETWFSDPVLCEQKKLWYMLSKTLAEDAAVKFSRENGLELVAINPGYVIGPILQPTLNMTSEGFMRMIE

Gene3D: G3DSA:3.40.50.720
IPR016040
6-214 no description
NAD(P)-binding domain

KVVCVTGASGFIASWIVKLLLDRGYSVHATVRSLADPKKTEHLVALDGAKERLTLFEATLTEEGSFDAAIDGCVCVFHTASPVLLSVDDPHAQLVDPAVKGTLSVLKSAAKVPSLKRVVLTSSMAAVVFGAKLPEPSDVVDETWFSDPVLCEQKKLWYMLSKTLAEDAAVKFSRENGLELVAINPGYVIGPILQPTLNMTSEGFMRMIE

HMMPfam: PF01370
IPR001509
8-204 Epimerase
NAD-dependent epimerase/dehydratase

VCVTGASGFIASWIVKLLLDRGYSVHATVRSLADPKKTEHLVALDGAKERLTLFEATLTEEGSFDAAIDGCVCVFHTASPVLLSVDDPHAQLVDPAVKGTLSVLKSAAKVPSLKRVVLTSSMAAVVFGAKLPEPSDVVDETWFSDPVLCEQKKLWYMLSKTLAEDAAVKFSRENGLELVAINPGYVIGPILQPTLNM






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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