PRGDB00194160 (Ppa.19491)
| Ppa.19491 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 208375368 (DC936967) |
| Gene Class | Unknown |
| Domain Type | LRR |
| Gene Species | Physcomitrella patens |
DNA Sequence
GTACCTGCTGGGCTCGGGGAAGAAGAAGAACAACAACAAGACCGAGACCTTCTTTTGATTGTGTGTGGAAGAAGAAGACCAGCATTATTATTGCAGCACAGCACAGCGCCACACAGATTTCACTCGCTGCACcgctttggggttgcttgctcgcttgcttgctcgcttgcttgcttgcatgcttgctgcagctgtgctttgctGAAAATGGAGAACTCAGGTGGAAGATTGGTTTTGTATGCATTGTTGGTTGGCGCTCTTCTACCTGCCGCACTTGCTAACTCTGAAGGAGATGCGCTGTATGCTCTCCGCCGGAGTTTGACTGATCCATCGAATGTGTTGCAAAGCTGGGATCCTACCTTGGTCAATCCTTGCACCTGGTTCCATGTGACGTGTGACGGCCAAAATCGAGTCATCCGAGTGGATCTTGGGAATGCTCGCCTGTCCGGCTCTTTGGTCTCTGAACTTGGAGCACTTCAGAACCTGCAGTACCTGGAGTTGTACAAGAACAGCCTCACTGGTCACATTCCCTCGGAACTTGGCAAGTTGAAGTCTCTCGTGAGTTTGGACTTGTACCACAACAATTTTACAGGCTCCATTCCTCGCTCTCTTGGAAAGCTATCCAATCTGGCATTTCTACGTCTGAACAATAACAAGCTGACTGGTCGTATTCCACGTGAATTGACGTCAATCACCACCCTCAAAGCTGTCGATTTTTCAAACATGACTTGTGCGGCACAATTCCGGTCACGGGCTCTTTCAGTCATCTTCANGCCAGAACTTGANACACCCTCGTCTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Ppa.19491 | translated coding region predicted by ESTScan from UniGene Ppa.19491 | VPAGLGEEEEQQQDRDLLLIVCGRRRPALLLQHSTAPHRFHSLHRFGVACSLACSLACLHACCSCALLKMENSGGRLVLYALLVGALLPAALANSEGDALYALRRSLTDPSNVLQSWDPTLVNPCTWFHVTCDGQNRVIRVDLGNARLSGSLVSELGALQNLQYLELYKNSLTGHIPSELGKLKSLVSLDLYHNNFTGSIPRSLGKLSNLAFLRLNNNKLTGRIPRELTSITTLKAVDFSNMTCAAQFRSRALSVIFXPELXTPSSX |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 7-13 | seg | EEEEQQQ |
| Seg: seg | 49-68 | seg | ACSLACSLACLHACCSCALL |
| HMMPanther: PTHR24420:SF836 | 59-241 | SUBFAMILY NOT NAMED | LHACCSCALLKMENSGGRLVLYALLVGALLPAALANSEGDALYALRRSLTDPSNVLQSWDPTLVNPCTWFHVTCDGQNRVIRVDLGNARLSGSLVSELGALQNLQYLELYKNSLTGHIPSELGKLKSLVSLDLYHNNFTGSIPRSLGKLSNLAFLRLNNNKLTGRIPRELTSITTLKAVDFSN |
| HMMPanther: PTHR24420 | 59-241 | FAMILY NOT NAMED,FAMILY NOT NAMED | LHACCSCALLKMENSGGRLVLYALLVGALLPAALANSEGDALYALRRSLTDPSNVLQSWDPTLVNPCTWFHVTCDGQNRVIRVDLGNARLSGSLVSELGALQNLQYLELYKNSLTGHIPSELGKLKSLVSLDLYHNNFTGSIPRSLGKLSNLAFLRLNNNKLTGRIPRELTSITTLKAVDFSN |
| Seg: seg | 77-93 | seg | LVLYALLVGALLPAALA |
| superfamily: SSF52058 | 90-241 | L domain-like,LRR | AALANSEGDALYALRRSLTDPSNVLQSWDPTLVNPCTWFHVTCDGQNRVIRVDLGNARLSGSLVSELGALQNLQYLELYKNSLTGHIPSELGKLKSLVSLDLYHNNFTGSIPRSLGKLSNLAFLRLNNNKLTGRIPRELTSITTLKAVDFSN |
| HMMPfam: PF08263 IPR013210
|
93-133 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
ANSEGDALYALRRSLTDPSNVLQSWDPTLVNPCTWFHVTCD |
| Gene3D: G3DSA:3.80.10.10 | 95-242 | no description | SEGDALYALRRSLTDPSNVLQSWDPTLVNPCTWFHVTCDGQNRVIRVDLGNARLSGSLVSELGALQNLQYLELYKNSLTGHIPSELGKLKSLVSLDLYHNNFTGSIPRSLGKLSNLAFLRLNNNKLTGRIPRELTSITTLKAVDFSNM |
| HMMPfam: PF12799 | 161-197 | LRR_4,Leucine Rich repeats (2 copies) | NLQYLELYKNSLTGHIPSELGKLKSLVSLDLYHNNFT |
| HMMPfam: PF13504 | 208-222 | LRR_7,Leucine rich repeat | SNLAFLRLNNNKLTG |
List of Contributions
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