PRGDB00218623 (Thhalv10000508m)

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Thhalv10000508m
Gene Type Putative_R-Genes,_predicted_from_Pythozome
GenBank
Gene Class Unknown
Domain Type Ser-Thr Kinase
Gene Species Eutrema halophilum

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DNA Sequence

ATGGAGAAACTCTGTCTTCGAAACTCTGTTTCTCTCATGACGATGGTGGTTATTGTTCTTCTTCCTCGTTGCACTCTTTCTACTACTTCTACATATTCTCGTCCCGAGAAGTTGTACGTCAACTGTGGGTCGGATTCTAATGTCACTTACGGTAACCGGACTTTTGTCGGAGATATGATCTCTGGTGGTAACTCCGTTTCATTCACCAAGAAAGGAACTGAAGCCATCAACCAATCAGGATCAGGAATCTACGAAATGGTTAGGATATTCACAAGCCCTTCTTCTTACAAGTTCCAACTCGATTCCGTTGGTCTGCACTTCGTGCGTCTCCATTTCTCTGCTGTCTCTTCTCGGACACAGCTTTTAGCTGCTCGTTTCACAATCTCAGCTACTTCTCACTTGAAAAGTTTCTCGCTTCAGAATTTCAATGAGACCCCACGAGTTGAGGAGTTTCTCCTGATGATTGACTCGCCGGAATTCGAAATTCGATTTGTGCCCGATCATTCATCCATGGCTTTCGTCAACGCCATCGAAGTGTTCTCTGCTCCAGATGACCTAGAAATTCCGTCAGACTCCGACAAGAATCTGCATACGGTTTACAGATTAAACGTAGGAGGCAAGAAGATCACACCAGAAAACGACACCTTGGGAAGAACTTGGTCATTAGACGATGACTTCCTCTACGAAAAAGATTCTGCGAGGAACATTAACTCAACACAAAAGCCTAACTATGAGTCAGGAACAGTGACGCAATTCACTGCTCCTGATTTCGTCTATCAGACAGCTAAAACGATGAACCATAGCTCGAACGAGGGGGTGGTAGAGGGAATGTTGATGAACGTCACTTGGTCATTTAAGGTCAAAAGCAGCTCAAGACACTTCATCAGGGTTCACTTCTGTGATATCAAGAGTGAATCACAAAATCCCGACTCCGATTTCTATCTCTATGTAAACGGACAATCACGACTAGATGTAAAGCCTTCAGAGCGTATTAGGTTGGTGACTCCGTTTTTCAAAGATGTGAATGTCTCTGATGGTTTTGGACTCTTGAATGTTACAATAGGTACTAAGGATTCCACTAAGGATGCTGGTTTTCTGAATGGTCTGGAGGTGATGGAGTTTTTGAAAAAGTCAGATTCTTCAGATAAAAGTAGTTTCCGGGTTTACATCATTGCTGGCTGTGTTGTTGCTGCATCGGTTCTGGTATTGAGTTTGTTGTTCACAGTTTTCTTGAAGCGGAGGAGATTGAAGAAGGAAAAGAAGTTAGACGCTGAGGTCACTGAATGGTCTCCTTTGCCATTGTACAGAGGTGGTGGGAGTTCCGACAATAGACCTTCTGATCCGGTCAACAATTCTCCATTACGCAGCAATAGAACTTTTGATCCGGTCAACAATTCGCCATTACGCAACCTAAACTTAGGCTTGACCATTCCCTTCATAGACATTATGAGAGCTACAAACAATTTCGACGAGCAGTGGTTGATCGGGAGAGGCGGTTTCGGAGACGTTTACAAAGCCATTCTTCAAGATGGAAGCAAAGCGGCTATCAAGAGAGGCAAGAGTGGTTCAGGACAAGGAATATTGGAGTTTCAAACAGAGATTCAAGTCCTGTCGAGAATCCGGCACAGGCACCTCGTTTCTCTAACGGGTTACTGCGAAGAGAACTCGGAAATGATCCTTGTCTACGAGTTTATGGAGAAAGGTACGCTTAAGGAGCATCTATATGGCTCGGATTTGCCTTCACTGACATGGAAACAGAGACTAGAGATCTGCATCGGAGCAGCCAGAGGTTTGCATTATCTCCACAGTGGCTCAGAAGGAGCAATCATTCACAGAGATGTCAAATCCACAAACATACTACTAGACGAGAACACCGTAGCCAAAGTTGCCGATTTCGGGCTCTCAAAACTCGCGGTTCGTAATCAAGATCCGATTAATATCAGCACTAACATCAAAGGAACATTCGGTTACCTCGATCCTGAGTATCTGCAGACACACATCTTGACGGAGAAATCAGATGTTTACGCTTTTGGAGTCGTTCTCCTCGAGGTCTTGTGCGCGAGATCGGCTCTCGATCCTTCTCTTCCTCACGAGGAAGTGAATCTAGCCGAGTGGGCGATGTTCTGCAAATCCAAAGGGATAATCGATGAGATCTTAGATCCGAAATTGATAGGTCAGATCGAGCCGAGTTCGTTGAGGAAATACATGGAAATCGCGGAGAAGTGTTTGAAAGAGTACGGAGACGAGAGGCCGAGCATGGGGGATGTGATCTGGGATCTGGAGTATGTTCTTCAGCTTCAGATGATGCCGATTCGCAGAGAGCCTCATGAGGATAGCGCCGCGACGATCTCCGGCGGCGGAGGCGAAAGCTCGTTGGTGATTCCGAGGTTGATGGTGAGTGATTCGTTTAGCTCAAACTCGATTGTTCAGAAGAACGAAGGGAAGAGCAGCTATGGAGGTACAGATTCATCGGAGAGTCGAGTTTTCTCCCAATTGAAGATCTCCGAAGCAAGATAA


Protein sequences

Name Description Sequence
Thhalv10000508m protein obtained from Pythozome database for gene Thhalv10000508m

MEKLCLRNSVSLMTMVVIVLLPRCTLSTTSTYSRPEKLYVNCGSDSNVTYGNRTFVGDMISGGNSVSFTKKGTEAINQSGSGIYEMVRIFTSPSSYKFQLDSVGLHFVRLHFSAVSSRTQLLAARFTISATSHLKSFSLQNFNETPRVEEFLLMIDSPEFEIRFVPDHSSMAFVNAIEVFSAPDDLEIPSDSDKNLHTVYRLNVGGKKITPENDTLGRTWSLDDDFLYEKDSARNINSTQKPNYESGTVTQFTAPDFVYQTAKTMNHSSNEGVVEGMLMNVTWSFKVKSSSRHFIRVHFCDIKSESQNPDSDFYLYVNGQSRLDVKPSERIRLVTPFFKDVNVSDGFGLLNVTIGTKDSTKDAGFLNGLEVMEFLKKSDSSDKSSFRVYIIAGCVVAASVLVLSLLFTVFLKRRRLKKEKKLDAEVTEWSPLPLYRGGGSSDNRPSDPVNNSPLRSNRTFDPVNNSPLRNLNLGLTIPFIDIMRATNNFDEQWLIGRGGFGDVYKAILQDGSKAAIKRGKSGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKGTLKEHLYGSDLPSLTWKQRLEICIGAARGLHYLHSGSEGAIIHRDVKSTNILLDENTVAKVADFGLSKLAVRNQDPINISTNIKGTFGYLDPEYLQTHILTEKSDVYAFGVVLLEVLCARSALDPSLPHEEVNLAEWAMFCKSKGIIDEILDPKLIGQIEPSSLRKYMEIAEKCLKEYGDERPSMGDVIWDLEYVLQLQMMPIRREPHEDSAATISGGGGESSLVIPRLMVSDSFSSNSIVQKNEGKSSYGGTDSSESRVFSQLKISEAR*

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR24420
5-836 FAMILY NOT NAMED,FAMILY NOT NAMED

CLRNSVSLMTMVVIVLLPRCTLSTTSTYSRPEKLYVNCGSDSNVTYGNRTFVGDMISGGNSVSFTKKGTEAINQSGSGIYEMVRIFTSPSSYKFQLDSVGLHFVRLHFSAVSSRTQLLAARFTISATSHLKSFSLQNFNETPRVEEFLLMIDSPEFEIRFVPDHSSMAFVNAIEVFSAPDDLEIPSDSDKNLHTVYRLNVGGKKITPENDTLGRTWSLDDDFLYEKDSARNINSTQKPNYESGTVTQFTAPDFVYQTAKTMNHSSNEGVVEGMLMNVTWSFKVKSSSRHFIRVHFCDIKSESQNPDSDFYLYVNGQSRLDVKPSERIRLVTPFFKDVNVSDGFGLLNVTIGTKDSTKDAGFLNGLEVMEFLKKSDSSDKSSFRVYIIAGCVVAASVLVLSLLFTVFLKRRRLKKEKKLDAEVTEWSPLPLYRGGGSSDNRPSDPVNNSPLRSNRTFDPVNNSPLRNLNLGLTIPFIDIMRATNNFDEQWLIGRGGFGDVYKAILQDGSKAAIKRGKSGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKGTLKEHLYGSDLPSLTWKQRLEICIGAARGLHYLHSGSEGAIIHRDVKSTNILLDENTVAKVADFGLSKLAVRNQDPINISTNIKGTFGYLDPEYLQTHILTEKSDVYAFGVVLLEVLCARSALDPSLPHEEVNLAEWAMFCKSKGIIDEILDPKLIGQIEPSSLRKYMEIAEKCLKEYGDERPSMGDVIWDLEYVLQLQMMPIRREPHEDSAATISGGGGESSLVIPRLMVSDSFSSNSIVQKNEGKSSYGGTDSSESRVFSQLKISE

HMMPanther: PTHR24420:SF785
5-836 SUBFAMILY NOT NAMED

CLRNSVSLMTMVVIVLLPRCTLSTTSTYSRPEKLYVNCGSDSNVTYGNRTFVGDMISGGNSVSFTKKGTEAINQSGSGIYEMVRIFTSPSSYKFQLDSVGLHFVRLHFSAVSSRTQLLAARFTISATSHLKSFSLQNFNETPRVEEFLLMIDSPEFEIRFVPDHSSMAFVNAIEVFSAPDDLEIPSDSDKNLHTVYRLNVGGKKITPENDTLGRTWSLDDDFLYEKDSARNINSTQKPNYESGTVTQFTAPDFVYQTAKTMNHSSNEGVVEGMLMNVTWSFKVKSSSRHFIRVHFCDIKSESQNPDSDFYLYVNGQSRLDVKPSERIRLVTPFFKDVNVSDGFGLLNVTIGTKDSTKDAGFLNGLEVMEFLKKSDSSDKSSFRVYIIAGCVVAASVLVLSLLFTVFLKRRRLKKEKKLDAEVTEWSPLPLYRGGGSSDNRPSDPVNNSPLRSNRTFDPVNNSPLRNLNLGLTIPFIDIMRATNNFDEQWLIGRGGFGDVYKAILQDGSKAAIKRGKSGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKGTLKEHLYGSDLPSLTWKQRLEICIGAARGLHYLHSGSEGAIIHRDVKSTNILLDENTVAKVADFGLSKLAVRNQDPINISTNIKGTFGYLDPEYLQTHILTEKSDVYAFGVVLLEVLCARSALDPSLPHEEVNLAEWAMFCKSKGIIDEILDPKLIGQIEPSSLRKYMEIAEKCLKEYGDERPSMGDVIWDLEYVLQLQMMPIRREPHEDSAATISGGGGESSLVIPRLMVSDSFSSNSIVQKNEGKSSYGGTDSSESRVFSQLKISE

HMMPfam: PF12819
IPR024788
40-373 Malectin_like,Carbohydrate-binding protein of the ER
Malectin-like carbohydrate-binding domain

VNCGSDSNVTYGNRTFVGDMISGGNSVSFTKKGTEAINQSGSGIYEMVRIFTSPSSYKFQLDSVGLHFVRLHFSAVSSRTQLLAARFTISATSHLKSFSLQNFNETPRVEEFLLMIDSPEFEIRFVPDHSSMAFVNAIEVFSAPDDLEIPSDSDKNLHTVYRLNVGGKKITPENDTLGRTWSLDDDFLYEKDSARNINSTQKPNYESGTVTQFTAPDFVYQTAKTMNHSSNEGVVEGMLMNVTWSFKVKSSSRHFIRVHFCDIKSESQNPDSDFYLYVNGQSRLDVKPSERIRLVTPFFKDVNVSDGFGLLNVTIGTKDSTKDAGFLNGLEVME

Seg: seg
376-385 seg

KKSDSSDKSS

Seg: seg
395-422 seg

VVAASVLVLSLLFTVFLKRRRLKKEKKL

superfamily: SSF56112
IPR011009
461-776 Protein kinase-like (PK-like)
Protein kinase-like domain

DPVNNSPLRNLNLGLTIPFIDIMRATNNFDEQWLIGRGGFGDVYKAILQDGSKAAIKRGKSGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKGTLKEHLYGSDLPSLTWKQRLEICIGAARGLHYLHSGSEGAIIHRDVKSTNILLDENTVAKVADFGLSKLAVRNQDPINISTNIKGTFGYLDPEYLQTHILTEKSDVYAFGVVLLEVLCARSALDPSLPHEEVNLAEWAMFCKSKGIIDEILDPKLIGQIEPSSLRKYMEIAEKCLKEYGDERPSMGDVIWDLEYVLQLQMMPIRREPH

Gene3D: G3DSA:3.30.200.20
480-550 no description

IDIMRATNNFDEQWLIGRGGFGDVYKAILQDGSKAAIKRGKSGSGQGILEFQTEIQVLSRIRHRHLVSLTG

HMMSmart: SM00220
IPR002290
489-763 Serine/Threonine protein kinases, catalytic
Serine/threonine- / dual-specificity protein kinas

FDEQWLIGRGGFGDVYKAILQDGSKAAIKRGKSGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKGTLKEHLYGSDLPSLTWKQRLEICIGAARGLHYLHSGSEGAIIHRDVKSTNILLDENTVAKVADFGLSKLAVRNQDPINISTNIKGTFGYLDPEYLQTHILTEKSDVYAFGVVLLEVLCARSALDPSLPHEEVNLAEWAMFCKSKGIIDEILDPKLIGQIEPSSLRKYMEIAEKCLKEYGDERPSMGDVIWDLEYV

HMMSmart: SM00219
IPR020635
489-760 Tyrosine kinase, catalytic domain
Tyrosine-protein kinase, catalytic domain

FDEQWLIGRGGFGDVYKAILQDGSKAAIKRGKSGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKGTLKEHLYGSDLPSLTWKQRLEICIGAARGLHYLHSGSEGAIIHRDVKSTNILLDENTVAKVADFGLSKLAVRNQDPINISTNIKGTFGYLDPEYLQTHILTEKSDVYAFGVVLLEVLCARSALDPSLPHEEVNLAEWAMFCKSKGIIDEILDPKLIGQIEPSSLRKYMEIAEKCLKEYGDERPSMGDVIWDL

ProfileScan: PS50011
IPR000719
489-763 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

FDEQWLIGRGGFGDVYKAILQDGSKAAIKRGKSGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKGTLKEHLYGSDLPSLTWKQRLEICIGAARGLHYLHSGSEGAIIHRDVKSTNILLDENTVAKVADFGLSKLAVRNQDPINISTNIKGTFGYLDPEYLQTHILTEKSDVYAFGVVLLEVLCARSALDPSLPHEEVNLAEWAMFCKSKGIIDEILDPKLIGQIEPSSLRKYMEIAEKCLKEYGDERPSMGDVIWDLEYV

HMMPfam: PF07714
IPR001245
494-757 Pkinase_Tyr
Serine-threonine/tyrosine-protein kinase catalytic

LIGRGGFGDVYKAILQDGSKAAIKRGKSGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKGTLKEHLYGSDLPSLTWKQRLEICIGAARGLHYLHSGSEGAIIHRDVKSTNILLDENTVAKVADFGLSKLAVRNQDPINISTNIKGTFGYLDPEYLQTHILTEKSDVYAFGVVLLEVLCARSALDPSLPHEEVNLAEWAMFCKSKGIIDEILDPKLIGQIEPSSLRKYMEIAEKCLKEYGDERPSMGDVI

PatternScan: PS00107
IPR017441
495-517 PROTEIN_KINASE_ATP
Protein kinase, ATP binding site

IGRGGFGDVYKAILQDGSKAAIK

Gene3D: G3DSA:1.10.510.10
551-756 no description

YCEENSEMILVYEFMEKGTLKEHLYGSDLPSLTWKQRLEICIGAARGLHYLHSGSEGAIIHRDVKSTNILLDENTVAKVADFGLSKLAVRNQDPINISTNIKGTFGYLDPEYLQTHILTEKSDVYAFGVVLLEVLCARSALDPSLPHEEVNLAEWAMFCKSKGIIDEILDPKLIGQIEPSSLRKYMEIAEKCLKEYGDERPSMGDV

PatternScan: PS00108
IPR008271
609-621 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

IIHRDVKSTNILL






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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