PRGDB00218624 (Thhalv10000647m)
| Thhalv10000647m | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_Pythozome |
| GenBank | |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Eutrema halophilum |
DNA Sequence
ATGGCCTCTCCTTCTTTTAAGCCTCGCAACTACAAAGTCAATGTCTTTTCGAGCTTCCACAGGCCTGACGTCCGTAAAACACTTCTTAGTCACATGCGTGAACAGTTCAAACGCACGGGGATCACTATGTTTGATGATCAAGAGATTGAGAGAAGCGCAATAATCGCTCCTTCACTCATAGAAGCTATAAGAGAATCAAGGATCTCGATCGTAATTCTCTCCAAGAAATATGCTTCGTCAAGCTGGTGTTTGGATGAATTGGTGGAGATATTAGAGTGCAAAAAAGCTGGACAGACAGTGATGACCATCTTCTACGGAGTGCATCCATCCGATATACGGAAACAGACTGGAGAATTCGGGAACACATTCAATGAAACGTGTGCACATAAGACGGACCAGGAAAGGCAGAAATGGAGCAAAGCTTTAAACGATGTGGGAAACATTGCTGGAGAAGACTTTTTAAAATGGGATAATGAAGCAATAATGATCAAGAAGATTGCCAGAGATGTTTCAGATAAATTGAATGCTACACCATCTAGGGATTTTGATGGCATGGTTGGACTAAAAGCACATCTGAGAGACATGCAATCTTTGTTGCATTTAGATTATAAGGATGGAGCTATGATTGTTGGAATCTGTGGCCCTGCAGGCATTGGTAAGACTACCAGTGCCAGGGCTTTGTATAGCAGACTCTCTTGCAGTTTTCAGCTTACTTGTTTTATGGATAATCTTAGGGGAAGCTATCATAGTGGTCTTGACGAGTACGGATTGAAGCTCTGTCTACAAGAGCAACTTCTTTCAAAGATTTTGAACCAAAATGATATTAGGATAAGCCGTCTAGGTGTGAAAAAAGAAAGGCTACGCGACCACAAAGTGCTCATAATTCTTGATGATGTGAACAATATAAAGCAATTGGAGGCATTGGCAAATGAAACTACATGGTTTGGTCCTGGAAGTAAGATTATAGTTACAACAGAAAACAAAGACCTTTTGCAGCAACATGGAATCAACAATACATACCATGTGGGGTTTCCATCTAGAAAAGAAGCTCTTGAGATCTTATGTAGATATGCTTTGAAACAAAGCTATCCACATGATCATAGTTTTGAGGTGCTTGCTAAAAGGATAATAGAGCTTTGTGGTAACCTTCCATTGGGTCTACGTGTGGTGGGTTCATCTTTACGTGGGAAGAAGGAGTACGAATGGGAAGACGTAATAAACAGGCTAGAAACTATCATTGATAGAGATCTTGAGGACGTACTAAGAGTCGGTTATGAGAGTTTAGATGAGAATGAACAATCTCTGTTTCTCCACATTGCAGTCTTCTTCAAATATCAAGATGGAGATCTTGTGAAAACCATGTTCTCTGACAGTTACTTAGATGCCAAACGTGGTCTGAAGATCCTAGTCAATAGATCTCTTATAAAGATATCTAAATATGGGGAGAGAATACAGATGCATAGATTACTACGACAAGTGGGTCAAAAAGCCATTCATAAACAAGAGCCTTGGAAACGCCAAATTTTAATGGATGGTGATGAGATCTGTGATGTTCTGGAACTTGCCAAAGGTACAAGAGTTGTGTCTGGCATCTCATTTGATACATCAGGAACCAACGAAGTGATTGTTAGCGAAAGAGCCTTTAAAAGAATGCCTAATCTTCGATTCCTCAAAGTTTACAAAAGCAGATATGATGAAAATGATGTGATGCATAAACCTGGGGAGATGGAGTTTCCGCGTCGTCTAAGGTTACTACATTGGGAGGAATACCCGAGCAAGAGTCCTCCTCTTACATTTCATCCGGAATATCTTGTGGAAATGAATATGAAGCATAGCAAGCTAGAGTACCTCTGGCAAGGAACTCAGGTTACCCATGTCAGCTGCTCATGGATTCTGGTATTAAATCTTGGGTTATGCGGTCATACAATCCTATAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Thhalv10000647m | protein obtained from Pythozome database for gene Thhalv10000647m | MASPSFKPRNYKVNVFSSFHRPDVRKTLLSHMREQFKRTGITMFDDQEIERSAIIAPSLIEAIRESRISIVILSKKYASSSWCLDELVEILECKKAGQTVMTIFYGVHPSDIRKQTGEFGNTFNETCAHKTDQERQKWSKALNDVGNIAGEDFLKWDNEAIMIKKIARDVSDKLNATPSRDFDGMVGLKAHLRDMQSLLHLDYKDGAMIVGICGPAGIGKTTSARALYSRLSCSFQLTCFMDNLRGSYHSGLDEYGLKLCLQEQLLSKILNQNDIRISRLGVKKERLRDHKVLIILDDVNNIKQLEALANETTWFGPGSKIIVTTENKDLLQQHGINNTYHVGFPSRKEALEILCRYALKQSYPHDHSFEVLAKRIIELCGNLPLGLRVVGSSLRGKKEYEWEDVINRLETIIDRDLEDVLRVGYESLDENEQSLFLHIAVFFKYQDGDLVKTMFSDSYLDAKRGLKILVNRSLIKISKYGERIQMHRLLRQVGQKAIHKQEPWKRQILMDGDEICDVLELAKGTRVVSGISFDTSGTNEVIVSERAFKRMPNLRFLKVYKSRYDENDVMHKPGEMEFPRRLRLLHWEEYPSKSPPLTFHPEYLVEMNMKHSKLEYLWQGTQVTHVSCSWILVLNLGLCGHTIL* |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Gene3D: G3DSA:3.40.50.10140 | 9-145 | no description | RNYKVNVFSSFHRPDVRKTLLSHMREQFKRTGITMFDDQEIERSAIIAPSLIEAIRESRISIVILSKKYASSSWCLDELVEILECKKAGQTVMTIFYGVHPSDIRKQTGEFGNTFNETCAHKTDQERQKWSKALNDV |
| ProfileScan: PS50104 IPR000157
|
11-148 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
YKVNVFSSFHRPDVRKTLLSHMREQFKRTGITMFDDQEIERSAIIAPSLIEAIRESRISIVILSKKYASSSWCLDELVEILECKKAGQTVMTIFYGVHPSDIRKQTGEFGNTFNETCAHKTDQERQKWSKALNDVGNI |
| HMMSmart: SM00255 IPR000157
|
12-148 | Toll Toll/interleukin-1 receptor homology (TIR) domain
|
KVNVFSSFHRPDVRKTLLSHMREQFKRTGITMFDDQEIERSAIIAPSLIEAIRESRISIVILSKKYASSSWCLDELVEILECKKAGQTVMTIFYGVHPSDIRKQTGEFGNTFNETCAHKTDQERQKWSKALNDVGNI |
| HMMPfam: PF01582 IPR000157
|
15-143 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VFSSFHRPDVRKTLLSHMREQFKRTGITMFDDQEIERSAIIAPSLIEAIRESRISIVILSKKYASSSWCLDELVEILECKKAGQTVMTIFYGVHPSDIRKQTGEFGNTFNETCAHKTDQERQKWSKALN |
| HMMPanther: PTHR11017:SF20 | 35-622 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | QFKRTGITMFDDQEIERSAIIAPSLIEAIRESRISIVILSKKYASSSWCLDELVEILECKKAGQTVMTIFYGVHPSDIRKQTGEFGNTFNETCAHKTDQERQKWSKALNDVGNIAGEDFLKWDNEAIMIKKIARDVSDKLNATPSRDFDGMVGLKAHLRDMQSLLHLDYKDGAMIVGICGPAGIGKTTSARALYSRLSCSFQLTCFMDNLRGSYHSGLDEYGLKLCLQEQLLSKILNQNDIRISRLGVKKERLRDHKVLIILDDVNNIKQLEALANETTWFGPGSKIIVTTENKDLLQQHGINNTYHVGFPSRKEALEILCRYALKQSYPHDHSFEVLAKRIIELCGNLPLGLRVVGSSLRGKKEYEWEDVINRLETIIDRDLEDVLRVGYESLDENEQSLFLHIAVFFKYQDGDLVKTMFSDSYLDAKRGLKILVNRSLIKISKYGERIQMHRLLRQVGQKAIHKQEPWKRQILMDGDEICDVLELAKGTRVVSGISFDTSGTNEVIVSERAFKRMPNLRFLKVYKSRYDENDVMHKPGEMEFPRRLRLLHWEEYPSKSPPLTFHPEYLVEMNMKHSKLEYLWQGTQ |
| HMMPanther: PTHR11017 | 35-622 | FAMILY NOT NAMED,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | QFKRTGITMFDDQEIERSAIIAPSLIEAIRESRISIVILSKKYASSSWCLDELVEILECKKAGQTVMTIFYGVHPSDIRKQTGEFGNTFNETCAHKTDQERQKWSKALNDVGNIAGEDFLKWDNEAIMIKKIARDVSDKLNATPSRDFDGMVGLKAHLRDMQSLLHLDYKDGAMIVGICGPAGIGKTTSARALYSRLSCSFQLTCFMDNLRGSYHSGLDEYGLKLCLQEQLLSKILNQNDIRISRLGVKKERLRDHKVLIILDDVNNIKQLEALANETTWFGPGSKIIVTTENKDLLQQHGINNTYHVGFPSRKEALEILCRYALKQSYPHDHSFEVLAKRIIELCGNLPLGLRVVGSSLRGKKEYEWEDVINRLETIIDRDLEDVLRVGYESLDENEQSLFLHIAVFFKYQDGDLVKTMFSDSYLDAKRGLKILVNRSLIKISKYGERIQMHRLLRQVGQKAIHKQEPWKRQILMDGDEICDVLELAKGTRVVSGISFDTSGTNEVIVSERAFKRMPNLRFLKVYKSRYDENDVMHKPGEMEFPRRLRLLHWEEYPSKSPPLTFHPEYLVEMNMKHSKLEYLWQGTQ |
| superfamily: SSF52540 | 66-437 | P-loop containing nucleoside triphosphate hydrolases | SRISIVILSKKYASSSWCLDELVEILECKKAGQTVMTIFYGVHPSDIRKQTGEFGNTFNETCAHKTDQERQKWSKALNDVGNIAGEDFLKWDNEAIMIKKIARDVSDKLNATPSRDFDGMVGLKAHLRDMQSLLHLDYKDGAMIVGICGPAGIGKTTSARALYSRLSCSFQLTCFMDNLRGSYHSGLDEYGLKLCLQEQLLSKILNQNDIRISRLGVKKERLRDHKVLIILDDVNNIKQLEALANETTWFGPGSKIIVTTENKDLLQQHGINNTYHVGFPSRKEALEILCRYALKQSYPHDHSFEVLAKRIIELCGNLPLGLRVVGSSLRGKKEYEWEDVINRLETIIDRDLEDVLRVGYESLDENEQSLFL |
| Gene3D: G3DSA:3.40.50.300 | 178-333 | no description | PSRDFDGMVGLKAHLRDMQSLLHLDYKDGAMIVGICGPAGIGKTTSARALYSRLSCSFQLTCFMDNLRGSYHSGLDEYGLKLCLQEQLLSKILNQNDIRISRLGVKKERLRDHKVLIILDDVNNIKQLEALANETTWFGPGSKIIVTTENKDLLQQ |
| HMMPfam: PF00931 IPR002182
|
198-447 | NB-ARC,NBS NB-ARC
|
LLHLDYKDGAMIVGICGPAGIGKTTSARALYSRLSCSFQLTCFMDNLRGSYHSGLDEYGLKLCLQEQLLSKILNQNDIRISRLGVKKERLRDHKVLIILDDVNNIKQLEALANETTWFGPGSKIIVTTENKDLLQQHGINNTYHVGFPSRKEALEILCRYALKQSYPHDHSFEVLAKRIIELCGNLPLGLRVVGSSLRGKKEYEWEDVINRLETIIDRDLEDVLRVGYESLDENEQSLFLHIAVFFKYQD |
| HMMSmart: SM00382 IPR003593
|
206-419 | ATPases associated with a variety of cellula,NBS AAA+ ATPase domain
|
GAMIVGICGPAGIGKTTSARALYSRLSCSFQLTCFMDNLRGSYHSGLDEYGLKLCLQEQLLSKILNQNDIRISRLGVKKERLRDHKVLIILDDVNNIKQLEALANETTWFGPGSKIIVTTENKDLLQQHGINNTYHVGFPSRKEALEILCRYALKQSYPHDHSFEVLAKRIIELCGNLPLGLRVVGSSLRGKKEYEWEDVINRLETIIDRDLED |
| FPrintScan: PR00364 IPR000767
|
209-224 | DISEASERSIST Disease resistance protein
|
IVGICGPAGIGKTTSA |
| FPrintScan: PR00364 IPR000767
|
286-300 | DISEASERSIST Disease resistance protein
|
RLRDHKVLIILDDVN |
| FPrintScan: PR00364 IPR000767
|
380-394 | DISEASERSIST Disease resistance protein
|
CGNLPLGLRVVGSSL |
| HMMPfam: PF07725 IPR011713
|
603-622 | LRR_3 Leucine-rich repeat 3
|
YLVEMNMKHSKLEYLWQGTQ |
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